Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   D3P10_RS12660 Genome accession   NZ_CP032159
Coordinates   1266773..1267213 (+) Length   146 a.a.
NCBI ID   WP_071561239.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 22.1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1261773..1272213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3P10_RS06305 (D3P10_06305) - 1262269..1262472 (+) 204 WP_002451885.1 YqgQ family protein -
  D3P10_RS06310 (D3P10_06310) - 1262469..1263455 (+) 987 WP_002465775.1 ROK family glucokinase -
  D3P10_RS06315 (D3P10_06315) - 1263455..1263778 (+) 324 WP_015364969.1 MTH1187 family thiamine-binding protein -
  D3P10_RS06320 (D3P10_06320) - 1263782..1264405 (+) 624 WP_002465751.1 MBL fold metallo-hydrolase -
  D3P10_RS06325 (D3P10_06325) comGA 1264452..1265426 (+) 975 WP_119176369.1 competence type IV pilus ATPase ComGA Machinery gene
  D3P10_RS06330 (D3P10_06330) comGB 1265398..1266465 (+) 1068 WP_107529356.1 competence type IV pilus assembly protein ComGB -
  D3P10_RS06335 (D3P10_06335) comGC 1266478..1266795 (+) 318 WP_002465742.1 competence type IV pilus major pilin ComGC Machinery gene
  D3P10_RS12660 (D3P10_06340) comGD 1266773..1267213 (+) 441 WP_071561239.1 competence type IV pilus minor pilin ComGD Machinery gene
  D3P10_RS12550 - 1267290..1267493 (+) 204 WP_015364971.1 hypothetical protein -
  D3P10_RS06345 (D3P10_06345) - 1267534..1267908 (+) 375 WP_240431426.1 competence type IV pilus minor pilin ComGF -
  D3P10_RS06355 (D3P10_06355) - 1268067..1268585 (+) 519 WP_071561236.1 shikimate kinase -
  D3P10_RS06360 (D3P10_06360) gcvT 1268757..1269842 (+) 1086 WP_119176371.1 glycine cleavage system aminomethyltransferase GcvT -
  D3P10_RS06365 (D3P10_06365) gcvPA 1269861..1271210 (+) 1350 WP_058710165.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17001.31 Da        Isoelectric Point: 10.6205

>NTDB_id=314266 D3P10_RS12660 WP_071561239.1 1266773..1267213(+) (comGD) [Staphylococcus warneri strain 22.1]
MAKRLQIKAYNYIEMLMVLFILSILLLCTLSSKNLLTISKSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHIN
VKEENGKKYQIKIKDGKIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL

Nucleotide


Download         Length: 441 bp        

>NTDB_id=314266 D3P10_RS12660 WP_071561239.1 1266773..1267213(+) (comGD) [Staphylococcus warneri strain 22.1]
ATGGCGAAGCGATTGCAAATTAAAGCGTATAATTACATAGAAATGTTAATGGTATTATTCATTTTGTCTATACTATTGTT
GTGTACTTTAAGCAGTAAAAATCTTTTAACAATATCAAAATCTAATGATGAAATGAATATTAATCTACTAATAACTCAAT
TGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTTTAATGTTTAATCATCAATCTTCTCATATAAAT
GTTAAAGAAGAAAATGGTAAAAAGTATCAAATAAAAATAAAAGATGGGAAGATCATAAAGATAACGAAAATAAATCTAAT
TACCTTTGATAAAAACGGCAATGTTAATCATTTTGGTTCGTTAAATATAAAAATGAAACATTCAATATACAAAGTCATAT
TTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

49.664

100

0.507
  comGD Staphylococcus aureus N315

49.664

100

0.507

Multiple sequence alignment