Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D3P10_RS07695 Genome accession   NZ_CP032159
Coordinates   1579681..1580556 (-) Length   291 a.a.
NCBI ID   WP_375338525.1    Uniprot ID   -
Organism   Staphylococcus warneri strain 22.1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1574681..1585556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3P10_RS07680 (D3P10_07680) xerC 1574946..1575839 (-) 894 WP_058709410.1 tyrosine recombinase XerC -
  D3P10_RS07685 (D3P10_07685) trmFO 1576004..1577311 (-) 1308 WP_002466058.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D3P10_RS07690 (D3P10_07690) topA 1577428..1579503 (-) 2076 WP_026088907.1 type I DNA topoisomerase -
  D3P10_RS07695 (D3P10_07695) dprA 1579681..1580556 (-) 876 WP_375338525.1 DNA-processing protein DprA Machinery gene
  D3P10_RS07700 (D3P10_07700) sucD 1580790..1581695 (-) 906 WP_002466045.1 succinate--CoA ligase subunit alpha -
  D3P10_RS07705 (D3P10_07705) sucC 1581717..1582883 (-) 1167 WP_002466034.1 ADP-forming succinate--CoA ligase subunit beta -
  D3P10_RS07710 (D3P10_07710) - 1582991..1583761 (-) 771 WP_058709438.1 ribonuclease HII -
  D3P10_RS07715 (D3P10_07715) ylqF 1583754..1584629 (-) 876 WP_058709412.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 33912.04 Da        Isoelectric Point: 8.7971

>NTDB_id=314255 D3P10_RS07695 WP_375338525.1 1579681..1580556(-) (dprA) [Staphylococcus warneri strain 22.1]
MNLNEHFLLKLYWSHFTTSQIHQFYRYHPHIFQMTSNEQETSLLCWITQHHPTLLSKFHKYKQINIVEIMKILRQLHVKY
ITFFDENYPYLLKEIYDYPFVLFYKGDKKLFLSNQTLAIVGARKCSNYTQEALQYLFPSFKEKNITIISGLAEGADSEAH
IQALKIDLSTIAVLGFGHHYYYPRNLVSLRKNIEEKGLVISEYPPFSPIAKYKFPERNRIISGLSKGVLLTESNERSGSR
ITVDCALEQNRNVYVLPGKLFDSKTKGNLLLHQEGASMVVSAEDILQDYLN

Nucleotide


Download         Length: 876 bp        

>NTDB_id=314255 D3P10_RS07695 WP_375338525.1 1579681..1580556(-) (dprA) [Staphylococcus warneri strain 22.1]
ATGAATTTGAACGAACACTTTTTACTTAAATTATACTGGTCACATTTTACAACCTCACAAATCCATCAATTTTATCGGTA
CCACCCTCATATTTTCCAAATGACTTCTAATGAACAAGAAACTTCATTATTATGTTGGATTACTCAACATCATCCTACGC
TTCTATCAAAATTTCATAAATATAAACAAATAAATATAGTAGAAATTATGAAAATTCTTCGACAATTACATGTAAAATAT
ATCACTTTTTTCGACGAAAATTATCCTTATTTATTAAAAGAAATCTATGATTATCCATTTGTTCTATTTTATAAGGGAGA
TAAGAAATTATTTTTAAGTAATCAAACTTTGGCAATTGTTGGTGCTAGGAAATGTTCAAATTATACGCAAGAAGCACTAC
AATATCTTTTTCCTTCATTTAAAGAAAAAAATATTACGATTATTTCTGGGTTAGCAGAAGGTGCCGATAGTGAAGCACAC
ATACAAGCCTTGAAAATCGATTTATCAACCATTGCAGTATTAGGGTTTGGTCACCATTATTATTATCCTAGAAACTTAGT
TTCATTAAGAAAAAATATTGAAGAAAAGGGGTTAGTTATTTCGGAGTACCCACCATTTTCGCCAATTGCTAAGTATAAGT
TTCCAGAAAGAAATAGGATTATTAGTGGATTATCAAAAGGTGTATTATTAACTGAATCAAATGAAAGAAGTGGTAGCAGA
ATCACAGTTGATTGTGCATTAGAACAAAATAGAAATGTGTATGTTTTACCGGGTAAATTATTTGATTCAAAAACAAAAGG
AAATCTATTATTGCATCAAGAAGGAGCTTCTATGGTCGTTAGTGCTGAAGACATTTTACAAGACTATTTAAATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

55.986

97.595

0.546
  dprA Staphylococcus aureus N315

55.986

97.595

0.546

Multiple sequence alignment