Detailed information NTG0031416

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: HELPY_RS04190
• Genome accession: NC_012973
• Coordinates: 855214..855765 (-)
• Length: 183 a.a.
• NCBI ID: WP_000635131.1
• Uniprot ID: -
• Organism: Helicobacter pylori B38
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 850214..860765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HELPY_RS04175 (HELPY_0865)	-	851464..852318 (-)	855	WP_000611615.1	hypothetical protein	-
HELPY_RS08845 (HELPY_0866)	-	852331..853647 (-)	1317	WP_041200429.1	DUF3519 domain-containing protein	-
HELPY_RS08850 (HELPY_0867)	-	853619..855145 (-)	1527	WP_079996174.1	DUF3519 domain-containing protein	-
HELPY_RS04190 (HELPY_0868)	ruvA	855214..855765 (-)	552	WP_000635131.1	Holliday junction branch migration protein RuvA	Machinery gene
HELPY_RS04195 (HELPY_0869)	-	855791..857635 (-)	1845	WP_000051048.1	FapA family protein	-
HELPY_RS04200 (HELPY_0870)	murJ	857726..859186 (+)	1461	WP_000913532.1	murein biosynthesis integral membrane protein MurJ	-
HELPY_RS04205 (HELPY_0871)	cysS	859187..860584 (+)	1398	WP_000471282.1	cysteine--tRNA ligase	-

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 20291.96 Da
• Isoelectric Point: 9.7670

>NTDB_id=31416 HELPY_RS04190 WP_000635131.1 855214..855765(-) (ruvA) [Helicobacter pylori B38]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTAALLQVGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENRPARNEVFLALESLGFKSTEINKV
LKTLKPNLSIETAIKEALQQLRS

Nucleotide

• Length: 552 bp

>NTDB_id=31416 HELPY_RS04190 WP_000635131.1 855214..855765(-) (ruvA) [Helicobacter pylori B38]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCCGCTTTAGAAGCACATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACGGCTGCTTTGCTTCAAGTGGGCCAAAAAGCGCGTTTGAAGATCTTACAAGTGATCAAAG
AAGATGCACATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTTTTTGAAAGGCTTTTGAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCTACTAAAGAAGTCAA
AAGACTCCAACAAGTCCCAGGTATAGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAAACAGACCCGCACGCAATGAGGTTTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCACCGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCAATCTCAGCATAGAAACAGCGATTAAAGAAGCCTTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-127)

• RuvA N terminal domain (RuvA_N) (1-61)

• RuvA, C-terminal domain (RuvA_C) (139-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Helicobacter pylori 26695	95.628	100	0.956
ruvA	Streptococcus pneumoniae TIGR4	34.872	100	0.372
ruvA	Streptococcus pneumoniae R6	34.872	100	0.372
ruvA	Streptococcus pneumoniae D39	34.872	100	0.372