Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | LL1196_RS12510 | Genome accession | NZ_CP032148 |
| Coordinates | 2398680..2399180 (-) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris strain 1196 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2393680..2404180
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LL1196_RS12485 (LL1196_2492) | gnd | 2394805..2395710 (-) | 906 | WP_011677237.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| LL1196_RS12490 (LL1196_2493) | - | 2396079..2396927 (+) | 849 | WP_011677238.1 | MurR/RpiR family transcriptional regulator | - |
| LL1196_RS12495 (LL1196_2494) | - | 2396966..2397274 (+) | 309 | WP_021212062.1 | DUF960 domain-containing protein | - |
| LL1196_RS12500 (LL1196_2495) | - | 2397347..2398132 (-) | 786 | WP_021164832.1 | metallophosphoesterase | - |
| LL1196_RS12505 (LL1196_2496) | rpsR | 2398263..2398508 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| LL1196_RS12510 (LL1196_2497) | ssb | 2398680..2399180 (-) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| LL1196_RS12515 (LL1196_2498) | rpsF | 2399210..2399503 (-) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| LL1196_RS12520 (LL1196_2499) | - | 2399697..2400551 (-) | 855 | WP_011677243.1 | undecaprenyl-diphosphate phosphatase | - |
| LL1196_RS12525 (LL1196_2500) | - | 2401073..2402539 (+) | 1467 | WP_011677244.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=314110 LL1196_RS12510 WP_011677241.1 2398680..2399180(-) (ssb) [Lactococcus cremoris strain 1196]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=314110 LL1196_RS12510 WP_011677241.1 2398680..2399180(-) (ssb) [Lactococcus cremoris strain 1196]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |