Detailed information NTG0314053

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: D2M30_RS17625
• Genome accession: NZ_CP032146
• Coordinates: 3455363..3456526 (-)
• Length: 387 a.a.
• NCBI ID: WP_047475788.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain YP6
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3450363..3461526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2M30_RS17595 (D2M30_17620)	-	3450629..3451048 (-)	420	WP_013353782.1	TIGR03826 family flagellar region protein	-
D2M30_RS17600 (D2M30_17625)	comFC	3451122..3451811 (-)	690	WP_221623810.1	double zinc ribbon domain-containing protein	Machinery gene
D2M30_RS17605 (D2M30_17630)	-	3451817..3452101 (-)	285	WP_013353784.1	late competence development ComFB family protein	-
D2M30_RS17610 (D2M30_17635)	comFA	3452160..3453545 (-)	1386	WP_125123328.1	DEAD/DEAH box helicase	Machinery gene
D2M30_RS17615 (D2M30_17640)	-	3453652..3454500 (-)	849	WP_125123329.1	DegV family protein	-
D2M30_RS17620 (D2M30_17645)	degU	3454597..3455286 (-)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
D2M30_RS17625 (D2M30_17650)	degS	3455363..3456526 (-)	1164	WP_047475788.1	two-component sensor histidine kinase DegS	Regulator
D2M30_RS17630 (D2M30_17655)	-	3456750..3457397 (+)	648	WP_125123330.1	YigZ family protein	-
D2M30_RS17635 (D2M30_17660)	-	3457402..3458637 (+)	1236	WP_125123331.1	LCP family protein	-
D2M30_RS17640 (D2M30_17665)	-	3458738..3459814 (-)	1077	WP_013353790.1	glycosyltransferase family 4 protein	-
D2M30_RS17645 (D2M30_17670)	-	3459947..3461143 (-)	1197	WP_125123659.1	glycosyltransferase	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45028.85 Da
• Isoelectric Point: 7.1379

>NTDB_id=314053 D2M30_RS17625 WP_047475788.1 3455363..3456526(-) (degS) [Bacillus amyloliquefaciens strain YP6]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=314053 D2M30_RS17625 WP_047475788.1 3455363..3456526(-) (degS) [Bacillus amyloliquefaciens strain YP6]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTTAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTACATACCCGGCACGCAAGAAACCGCTTGTCGGAAGTAAGCAGG
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTCCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTGGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCGGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTGATAGAACGGATTTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCGCTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTGGTTCTTATTATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTCGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCCTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.584	99.483	0.951