Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   D2M30_RS17620 Genome accession   NZ_CP032146
Coordinates   3454597..3455286 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain YP6     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3449597..3460286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS17585 (D2M30_17610) - 3449796..3450278 (-) 483 WP_013353780.1 flagellar protein FlgN -
  D2M30_RS17590 (D2M30_17615) flgM 3450293..3450559 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  D2M30_RS17595 (D2M30_17620) - 3450629..3451048 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  D2M30_RS17600 (D2M30_17625) comFC 3451122..3451811 (-) 690 WP_221623810.1 double zinc ribbon domain-containing protein Machinery gene
  D2M30_RS17605 (D2M30_17630) - 3451817..3452101 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  D2M30_RS17610 (D2M30_17635) comFA 3452160..3453545 (-) 1386 WP_125123328.1 DEAD/DEAH box helicase Machinery gene
  D2M30_RS17615 (D2M30_17640) - 3453652..3454500 (-) 849 WP_125123329.1 DegV family protein -
  D2M30_RS17620 (D2M30_17645) degU 3454597..3455286 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D2M30_RS17625 (D2M30_17650) degS 3455363..3456526 (-) 1164 WP_047475788.1 two-component sensor histidine kinase DegS Regulator
  D2M30_RS17630 (D2M30_17655) - 3456750..3457397 (+) 648 WP_125123330.1 YigZ family protein -
  D2M30_RS17635 (D2M30_17660) - 3457402..3458637 (+) 1236 WP_125123331.1 LCP family protein -
  D2M30_RS17640 (D2M30_17665) - 3458738..3459814 (-) 1077 WP_013353790.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=314052 D2M30_RS17620 WP_003219701.1 3454597..3455286(-) (degU) [Bacillus amyloliquefaciens strain YP6]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=314052 D2M30_RS17620 WP_003219701.1 3454597..3455286(-) (degU) [Bacillus amyloliquefaciens strain YP6]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAAGCGGCTCGTATCGTCGAGCATTATCATCCCGATGTCGTCA
TAATGGATATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAGCAGCTTGTTGAGCTGTACCCTGAATCTAAGGTA
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTTCTGAAAGA
GATGGACGCGGATACTTTAATCGAGGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCACCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCTGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment