Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   D2M30_RS17610 Genome accession   NZ_CP032146
Coordinates   3452160..3453545 (-) Length   461 a.a.
NCBI ID   WP_125123328.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain YP6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3447160..3458545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS17575 (D2M30_17600) flgL 3447334..3448251 (-) 918 WP_115996789.1 flagellar hook-associated protein FlgL -
  D2M30_RS17580 (D2M30_17605) flgK 3448263..3449780 (-) 1518 WP_125123326.1 flagellar hook-associated protein FlgK -
  D2M30_RS17585 (D2M30_17610) - 3449796..3450278 (-) 483 WP_013353780.1 flagellar protein FlgN -
  D2M30_RS17590 (D2M30_17615) flgM 3450293..3450559 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  D2M30_RS17595 (D2M30_17620) - 3450629..3451048 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  D2M30_RS17600 (D2M30_17625) comFC 3451122..3451811 (-) 690 WP_221623810.1 double zinc ribbon domain-containing protein Machinery gene
  D2M30_RS17605 (D2M30_17630) - 3451817..3452101 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  D2M30_RS17610 (D2M30_17635) comFA 3452160..3453545 (-) 1386 WP_125123328.1 DEAD/DEAH box helicase Machinery gene
  D2M30_RS17615 (D2M30_17640) - 3453652..3454500 (-) 849 WP_125123329.1 DegV family protein -
  D2M30_RS17620 (D2M30_17645) degU 3454597..3455286 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D2M30_RS17625 (D2M30_17650) degS 3455363..3456526 (-) 1164 WP_047475788.1 two-component sensor histidine kinase DegS Regulator
  D2M30_RS17630 (D2M30_17655) - 3456750..3457397 (+) 648 WP_125123330.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52620.08 Da        Isoelectric Point: 9.8970

>NTDB_id=314051 D2M30_RS17610 WP_125123328.1 3452160..3453545(-) (comFA) [Bacillus amyloliquefaciens strain YP6]
MSGGASEFSEVRDFFYGRHLLRSEIPFSDQCIKRFIEEEYITAEPSVIRRKNRYVCRRCGQADQACFAVFWAPSAKRHIT
YCRSCVVMGRADELTSLYYWNQAAESSWEPIKLSWEGTLTDGQKQAADALIEAIKEKQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGSLTPLMISTAHQLIRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKRAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLEKGKLPRSVTDWV
RQKLQSRLPVFLFVPSVHILRKTTDYFQKLNIRAEGVHAEDTCRKDKVKRFREGRIDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEYMNKLAQKNKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=314051 D2M30_RS17610 WP_125123328.1 3452160..3453545(-) (comFA) [Bacillus amyloliquefaciens strain YP6]
ATGTCCGGAGGTGCTTCAGAATTTTCGGAGGTGCGGGATTTTTTTTACGGCAGGCATTTATTGAGATCTGAGATTCCGTT
TTCTGATCAGTGCATCAAACGTTTTATAGAAGAAGAATATATAACAGCCGAGCCGTCAGTCATCCGCCGGAAAAACCGTT
ATGTCTGCCGCCGATGCGGCCAGGCAGACCAAGCCTGCTTTGCGGTATTTTGGGCGCCCTCTGCCAAAAGACATATTACC
TATTGCCGTTCCTGTGTCGTAATGGGAAGGGCTGATGAGCTGACGTCATTATACTATTGGAATCAAGCGGCTGAAAGCAG
CTGGGAGCCTATCAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCGGCAGATGCGCTTATAGAAGCGA
TAAAAGAGAAACAAGAGCTGCTGGTGTGGGCTGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATAGAGTTT
GCGCTGAATCACGGCTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGATTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTCTGTACGGCGGAAGTGAGGATAAAGGCAGCTTGACTCCGCTAATGATCTCAA
CCGCACACCAGCTGATCCGCTATCGAGATATTTTTGATGTAATGATAATAGATGAAGTAGATGCTTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCGGTTGATAAAGCCAGAAAGAAAAACAGCGCCCTAGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAGGGCTGAGGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGTAAACCGCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTGAGAAAGGAAAACTGCCGCGTTCTGTAACGGATTGGGTC
CGGCAAAAACTTCAATCACGACTGCCGGTTTTCTTATTCGTTCCGTCTGTACATATATTAAGAAAAACAACGGATTATTT
TCAGAAATTAAACATCCGTGCAGAAGGCGTGCATGCGGAAGACACATGCAGAAAGGATAAAGTAAAACGGTTCAGAGAGG
GACGGATTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTACCCAAAGTCCAGACTTGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCACTTGTACAGATTGCAGGCAGAACGGGCAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGCATGAAAAAAGCAAAAAAACATATAGAATATATGAACAAATTGG
CACAAAAAAATAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(329-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.02

99.132

0.625

Multiple sequence alignment