Detailed information
Bioinformatically predicted
Overview
| Name | comGB | Type | Machinery gene |
| Locus tag | D2M30_RS12570 | Genome accession | NZ_CP032146 |
| Coordinates | 2498602..2499639 (-) | Length | 345 a.a. |
| NCBI ID | WP_125122959.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain YP6 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2493602..2504639
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D2M30_RS12520 (D2M30_12545) | tasA | 2493835..2494620 (-) | 786 | WP_013352862.1 | biofilm matrix protein TasA | - |
| D2M30_RS12525 (D2M30_12550) | sipW | 2494685..2495269 (-) | 585 | WP_125122955.1 | signal peptidase I SipW | - |
| D2M30_RS12530 (D2M30_12555) | tapA | 2495241..2495912 (-) | 672 | WP_125122956.1 | amyloid fiber anchoring/assembly protein TapA | - |
| D2M30_RS12535 (D2M30_12560) | - | 2496170..2496499 (+) | 330 | WP_013352865.1 | DUF3889 domain-containing protein | - |
| D2M30_RS12540 (D2M30_12565) | - | 2496540..2496719 (-) | 180 | WP_016938971.1 | YqzE family protein | - |
| D2M30_RS12545 (D2M30_12570) | comGG | 2496776..2497153 (-) | 378 | WP_071348016.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| D2M30_RS12550 (D2M30_12575) | comGF | 2497155..2497559 (-) | 405 | WP_185715963.1 | competence type IV pilus minor pilin ComGF | - |
| D2M30_RS12555 (D2M30_12580) | comGE | 2497564..2497878 (-) | 315 | WP_125122957.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| D2M30_RS12560 (D2M30_12585) | comGD | 2497862..2498299 (-) | 438 | WP_125122958.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| D2M30_RS12565 (D2M30_12590) | comGC | 2498289..2498597 (-) | 309 | WP_013352870.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| D2M30_RS12570 (D2M30_12595) | comGB | 2498602..2499639 (-) | 1038 | WP_125122959.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| D2M30_RS12575 (D2M30_12600) | comGA | 2499626..2500696 (-) | 1071 | WP_125122960.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| D2M30_RS12580 (D2M30_12605) | - | 2500890..2501839 (-) | 950 | Protein_2448 | magnesium transporter CorA family protein | - |
| D2M30_RS12585 (D2M30_12610) | - | 2501986..2503287 (+) | 1302 | WP_088613120.1 | hemolysin family protein | - |
| D2M30_RS12590 (D2M30_12615) | - | 2503325..2504155 (-) | 831 | WP_071348011.1 | STAS domain-containing protein | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39575.83 Da Isoelectric Point: 9.3927
>NTDB_id=314031 D2M30_RS12570 WP_125122959.1 2498602..2499639(-) (comGB) [Bacillus amyloliquefaciens strain YP6]
MKRIKSTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDSFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLICSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
QHFHEACALGMSAVLSLFLYVWFLCKKKSPQDKMLIVVKIPLIGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAEKYTGLLQPVIY
GVVAGMILLVYMSMLMPMYQMMNQM
MKRIKSTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDSFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLICSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
QHFHEACALGMSAVLSLFLYVWFLCKKKSPQDKMLIVVKIPLIGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAEKYTGLLQPVIY
GVVAGMILLVYMSMLMPMYQMMNQM
Nucleotide
Download Length: 1038 bp
>NTDB_id=314031 D2M30_RS12570 WP_125122959.1 2498602..2499639(-) (comGB) [Bacillus amyloliquefaciens strain YP6]
ATGAAGCGGATTAAAAGTACCTGGCCGTTGAAGGACCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
GTACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTCCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGAGAAGGCGATTCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCGATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTGTTGCAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATGTTCCGTCTGCGTCATGTTTTATATCCTGCAAAGCTTGA
TTATTCCGCAGTTTTCAGGGATTTATCAATCAATGAATATGAATACTTCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CAGCATTTTCATGAAGCCTGCGCACTGGGGATGTCAGCCGTTCTCAGTTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGACAAAATGCTAATCGTCGTGAAAATCCCCCTGATAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGTCTATCTATCTACGACAGCTTAACGGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTACCGTGAAGAAGCAGAGATGCTCATTACACGTTTGAAAGCCGGTGAAACTATAGAATCTGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCGGTCAGTCACGGACAGGCAAACGGCCGGCTTCATCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGAGAAGTATACCGGTCTTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTACTTGTGTATATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
ATGAAGCGGATTAAAAGTACCTGGCCGTTGAAGGACCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
GTACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTCCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGAGAAGGCGATTCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCATAAAGAAGCCGTCTCGATCTGCTAT
TTCGCGGAGAAACACGGAGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTGTTGCAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATATGTTCCGTCTGCGTCATGTTTTATATCCTGCAAAGCTTGA
TTATTCCGCAGTTTTCAGGGATTTATCAATCAATGAATATGAATACTTCCGGTGCGACTGCTTTCATCTTTGCGTTTTTT
CAGCATTTTCATGAAGCCTGCGCACTGGGGATGTCAGCCGTTCTCAGTTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGACAAAATGCTAATCGTCGTGAAAATCCCCCTGATAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGTCTATCTATCTACGACAGCTTAACGGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTACCGTGAAGAAGCAGAGATGCTCATTACACGTTTGAAAGCCGGTGAAACTATAGAATCTGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCGGTCAGTCACGGACAGGCAAACGGCCGGCTTCATCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGAGAAGTATACCGGTCTTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTACTTGTGTATATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGB | Bacillus subtilis subsp. subtilis str. 168 |
66.563 |
93.623 |
0.623 |