Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D2M30_RS01975 Genome accession   NZ_CP032146
Coordinates   384135..385088 (+) Length   317 a.a.
NCBI ID   WP_013351008.1    Uniprot ID   A0AAP7N4J3
Organism   Bacillus amyloliquefaciens strain YP6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 379135..390088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS01950 (D2M30_01955) - 379176..380603 (+) 1428 WP_171866174.1 HAMP domain-containing sensor histidine kinase -
  D2M30_RS01955 (D2M30_01960) rapC 380762..381910 (+) 1149 WP_065980700.1 tetratricopeptide repeat protein Regulator
  D2M30_RS01960 (D2M30_01965) phrC 381894..382013 (+) 120 WP_013351005.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  D2M30_RS01965 (D2M30_01970) - 382161..382262 (-) 102 WP_013351006.1 YjcZ family sporulation protein -
  D2M30_RS01970 (D2M30_01975) - 382357..383721 (-) 1365 WP_125122049.1 aspartate kinase -
  D2M30_RS01975 (D2M30_01980) ceuB 384135..385088 (+) 954 WP_013351008.1 ABC transporter permease Machinery gene
  D2M30_RS01980 (D2M30_01985) - 385078..386025 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  D2M30_RS01985 (D2M30_01990) - 386019..386777 (+) 759 WP_013351009.1 ABC transporter ATP-binding protein -
  D2M30_RS01990 (D2M30_01995) - 386799..387749 (+) 951 WP_065521914.1 siderophore ABC transporter substrate-binding protein -
  D2M30_RS01995 (D2M30_02000) - 387791..389218 (-) 1428 WP_088612151.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34975.26 Da        Isoelectric Point: 9.6741

>NTDB_id=313996 D2M30_RS01975 WP_013351008.1 384135..385088(+) (ceuB) [Bacillus amyloliquefaciens strain YP6]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQASTLFESRLPRLASIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=313996 D2M30_RS01975 WP_013351008.1 384135..385088(+) (ceuB) [Bacillus amyloliquefaciens strain YP6]
ATGAAGCTACGTTACTTACTTTTGTTACTGGCGGTATTGGCGTGTACTTCTATTTTTATCGGGGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAAGTACATTATTTGAAAGCCGGCTGCCGCGTCTGGCGAGCATTATTA
TTGCCGGCATGAGCCTGAGCATCTGCGGATTAATTATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCGAGGCTCGGTATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
CATCGCTTTTATTTTCGCGTTAGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGGGATTTCTCATTGGTCGTCAAAGGCCGCTACGAGCTTTTATACTTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAGTTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATCATCGTGTCGCTTATCGCTTCACTTGTGATTTTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCGAATATGGTGTCGATCTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTGTTAGGTGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATATTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTGATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment