Detailed information NTG0313994

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: D2M30_RS01955
• Genome accession: NZ_CP032146
• Coordinates: 380762..381910 (+)
• Length: 382 a.a.
• NCBI ID: WP_065980700.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain YP6
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 375762..386910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2M30_RS01935 (D2M30_01940)	-	376159..376842 (-)	684	WP_125122047.1	ABC transporter ATP-binding protein	-
D2M30_RS01940 (D2M30_01945)	-	376857..378293 (-)	1437	WP_125122048.1	ABC transporter permease	-
D2M30_RS01945 (D2M30_01950)	-	378506..379189 (+)	684	WP_013351002.1	response regulator transcription factor	-
D2M30_RS01950 (D2M30_01955)	-	379176..380603 (+)	1428	WP_171866174.1	HAMP domain-containing sensor histidine kinase	-
D2M30_RS01955 (D2M30_01960)	rapC	380762..381910 (+)	1149	WP_065980700.1	tetratricopeptide repeat protein	Regulator
D2M30_RS01960 (D2M30_01965)	phrC	381894..382013 (+)	120	WP_013351005.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
D2M30_RS01965 (D2M30_01970)	-	382161..382262 (-)	102	WP_013351006.1	YjcZ family sporulation protein	-
D2M30_RS01970 (D2M30_01975)	-	382357..383721 (-)	1365	WP_125122049.1	aspartate kinase	-
D2M30_RS01975 (D2M30_01980)	ceuB	384135..385088 (+)	954	WP_013351008.1	ABC transporter permease	Machinery gene
D2M30_RS01980 (D2M30_01985)	-	385078..386025 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
D2M30_RS01985 (D2M30_01990)	-	386019..386777 (+)	759	WP_013351009.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45564.84 Da
• Isoelectric Point: 5.0703

>NTDB_id=313994 D2M30_RS01955 WP_065980700.1 380762..381910(+) (rapC) [Bacillus amyloliquefaciens strain YP6]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQNRID
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=313994 D2M30_RS01955 WP_065980700.1 380762..381910(+) (rapC) [Bacillus amyloliquefaciens strain YP6]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTACCGATACATAAGAACATTCAGCGT
GCCGGATGCAGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCGAACTTAGTACTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTATTTGGAGCCGCTGGAGAAATTGAAAATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTCGATAACATAGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATTACGTATTATAAACAGGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGCGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAATGCTTATGAAATTTACGTAGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTGTTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGAACCGCATCGAC
GAAGCCATACCGTACTTTGAACGGGCAGTTGATACATTTGAATCACAAAGAATCGTCAATTCACTCCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGATAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTAGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.368	99.476	0.571