Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SEZ_RS08275 Genome accession   NC_011134
Coordinates   1741964..1742890 (-) Length   308 a.a.
NCBI ID   WP_012516280.1    Uniprot ID   B4U4V7
Organism   Streptococcus equi subsp. zooepidemicus MGCS10565     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1736964..1747890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEZ_RS08265 (Sez_1693) amiF 1739969..1740892 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  SEZ_RS08270 (Sez_1694) amiE 1740885..1741955 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  SEZ_RS08275 (Sez_1695) amiD 1741964..1742890 (-) 927 WP_012516280.1 oligopeptide ABC transporter permease OppC Regulator
  SEZ_RS08280 (Sez_1696) amiC 1742890..1744389 (-) 1500 WP_012516281.1 ABC transporter permease Regulator
  SEZ_RS08285 (Sez_1697) amiA3 1744453..1746429 (-) 1977 WP_012516282.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34532.41 Da        Isoelectric Point: 7.1547

>NTDB_id=31395 SEZ_RS08275 WP_012516280.1 1741964..1742890(-) (amiD) [Streptococcus equi subsp. zooepidemicus MGCS10565]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTVVMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVIVGGIWGVSKAVDKVMIEVYNIISNLPQMLIIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTPTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=31395 SEZ_RS08275 WP_012516280.1 1741964..1742890(-) (amiD) [Streptococcus equi subsp. zooepidemicus MGCS10565]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTCTTTAGGCAATTCTTCTCACGTAAATCAACCGTTGTGATGCTGGTTATTTTAATCGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTGACGTGAGCAATATTAATGATTTTTCAAAACGT
TATATAGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTTATTGCAACCATCATCAATATGATTATCGGAGTCATTGTCGGTGGTATTTGGGGTG
TTTCCAAAGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCATTATCATTGTG
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGGATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACACCCACCCATAAAA
TTGTCATTAAAAACCTTTTGCCTCAATTGGTTTCGGTGATCGTTTCGATGGTTTCCTTGCTATTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGGTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACGAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B4U4V7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.649

100

0.756
  amiD Streptococcus thermophilus LMG 18311

75.325

100

0.753
  amiD Streptococcus thermophilus LMD-9

75.325

100

0.753

Multiple sequence alignment