Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SEZ_RS08270 Genome accession   NC_011134
Coordinates   1740885..1741955 (-) Length   356 a.a.
NCBI ID   WP_012516279.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus MGCS10565     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1735885..1746955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEZ_RS08265 (Sez_1693) amiF 1739969..1740892 (-) 924 WP_012516278.1 ATP-binding cassette domain-containing protein Regulator
  SEZ_RS08270 (Sez_1694) amiE 1740885..1741955 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  SEZ_RS08275 (Sez_1695) amiD 1741964..1742890 (-) 927 WP_012516280.1 oligopeptide ABC transporter permease OppC Regulator
  SEZ_RS08280 (Sez_1696) amiC 1742890..1744389 (-) 1500 WP_012516281.1 ABC transporter permease Regulator
  SEZ_RS08285 (Sez_1697) amiA3 1744453..1746429 (-) 1977 WP_012516282.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 39734.86 Da        Isoelectric Point: 6.1118

>NTDB_id=31394 SEZ_RS08270 WP_012516279.1 1740885..1741955(-) (amiE) [Streptococcus equi subsp. zooepidemicus MGCS10565]
MTEKQEIILSAKNIVVEFDVRDRVLTAIRDVSLDLYKGEVLAVVGESGSGKSVLTKTFTGMLEANGRVASGTITYAGQEL
TELKNHKDWEAIRGSKIATIFQDPMTSLDPIQTIGSQITEVIVKHQKKSRSEAKALAIDYMTRVGIPEPEKRFGEYPFQY
SGGMRQRIVIAIALACKPDILICDEPTTALDVTIQAQIIDLLKTLQKEYHFTIIFITHDLGVVASIADKVAVMYAGEIIE
YGKVEEIFYDPRHPYTWSLLSSLPQLADEKGVLFSIPGTPPSLYKPIVGDAFAPRSQYAMAIDFEETVPRFTISDTHWAK
TWLLHPDAPKVQKPAVIQDLHQKILKKMSRQEEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=31394 SEZ_RS08270 WP_012516279.1 1740885..1741955(-) (amiE) [Streptococcus equi subsp. zooepidemicus MGCS10565]
ATGACTGAAAAACAAGAAATTATATTAAGTGCTAAAAATATTGTTGTAGAGTTTGATGTGCGTGATCGTGTACTGACCGC
TATTCGCGATGTTTCTCTTGATTTGTACAAGGGAGAGGTATTGGCTGTTGTTGGTGAGTCAGGCTCTGGCAAGTCTGTTT
TAACTAAGACATTTACAGGAATGCTGGAGGCAAATGGACGTGTTGCTTCAGGGACGATAACCTATGCGGGTCAAGAACTA
ACAGAGCTTAAAAATCATAAGGACTGGGAAGCTATTCGCGGCTCTAAAATTGCTACTATTTTCCAGGATCCAATGACTAG
TCTAGATCCGATTCAAACGATTGGCAGCCAGATTACTGAGGTTATTGTTAAGCATCAGAAAAAATCTAGATCAGAGGCTA
AGGCTTTAGCGATCGATTATATGACAAGAGTCGGTATTCCTGAGCCGGAAAAGCGCTTTGGAGAGTATCCTTTCCAATAT
TCTGGTGGTATGAGACAGCGTATCGTTATTGCCATTGCCCTAGCCTGTAAGCCAGATATTCTTATCTGTGATGAGCCGAC
AACAGCTCTTGACGTTACCATTCAGGCTCAGATTATTGACCTGTTAAAGACACTTCAAAAAGAGTATCACTTCACCATTA
TCTTTATCACGCATGACCTAGGAGTGGTTGCAAGTATTGCTGACAAGGTTGCTGTTATGTACGCAGGGGAGATTATCGAG
TATGGGAAGGTTGAAGAAATCTTCTATGATCCTCGTCACCCCTACACATGGAGCTTATTATCTAGCCTACCGCAATTGGC
AGATGAAAAGGGCGTTCTGTTTTCAATTCCAGGGACACCTCCGTCCCTATACAAGCCAATTGTTGGGGATGCCTTTGCGC
CACGCTCTCAGTATGCTATGGCCATTGATTTTGAAGAAACAGTTCCTCGTTTTACGATCAGTGACACGCATTGGGCAAAA
ACCTGGCTCCTACACCCAGATGCTCCTAAGGTTCAAAAACCAGCTGTTATTCAGGATTTACACCAAAAAATATTGAAAAA
AATGTCACGCCAGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

80

100

0.809
  amiE Streptococcus thermophilus LMG 18311

78.889

100

0.798
  amiE Streptococcus thermophilus LMD-9

78.889

100

0.798
  oppD Streptococcus mutans UA159

56.456

93.539

0.528

Multiple sequence alignment