Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CDG61_RS10540 Genome accession   NZ_CP032143
Coordinates   2104373..2105080 (+) Length   235 a.a.
NCBI ID   WP_087513889.1    Uniprot ID   A0A3B7LYD2
Organism   Acinetobacter sp. WCHAc010052     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2099373..2110080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG61_RS10520 (CDG61_10520) - 2100134..2100622 (+) 489 WP_087550924.1 rhodanese-like domain-containing protein -
  CDG61_RS10525 (CDG61_10525) - 2100801..2101733 (+) 933 WP_068974224.1 family 2A encapsulin nanocompartment shell protein -
  CDG61_RS10530 (CDG61_10530) - 2101708..2103654 (+) 1947 WP_087550923.1 family 2A encapsulin nanocompartment cargo protein cysteine desulfurase -
  CDG61_RS10535 (CDG61_10535) - 2103806..2104225 (-) 420 WP_087512401.1 OsmC family protein -
  CDG61_RS10540 (CDG61_10540) crp 2104373..2105080 (+) 708 WP_087513889.1 cAMP-activated global transcriptional regulator CRP Regulator
  CDG61_RS10545 (CDG61_10545) - 2105242..2106290 (+) 1049 Protein_1953 NADP(H)-dependent aldo-keto reductase -
  CDG61_RS10550 (CDG61_10550) - 2106398..2107177 (-) 780 WP_087513887.1 M48 family metallopeptidase -
  CDG61_RS10555 (CDG61_10555) - 2107290..2107595 (-) 306 WP_087513886.1 hypothetical protein -
  CDG61_RS10560 (CDG61_10560) - 2107754..2108596 (-) 843 WP_087550922.1 M48 family metallopeptidase -
  CDG61_RS10565 (CDG61_10565) - 2108757..2110076 (-) 1320 WP_087513884.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26590.20 Da        Isoelectric Point: 4.5573

>NTDB_id=313871 CDG61_RS10540 WP_087513889.1 2104373..2105080(+) (crp) [Acinetobacter sp. WCHAc010052]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEITYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDVSLEQNEVSEDEFDEED

Nucleotide


Download         Length: 708 bp        

>NTDB_id=313871 CDG61_RS10540 WP_087513889.1 2104373..2105080(+) (crp) [Acinetobacter sp. WCHAc010052]
ATGACTTCAAACTTTTCACAACTAAGCACTGATGCGCTGTCTCCAGGACAGCTGCCAGAGTCAGTCAAAGCATTATTAAA
ACGTGCTTATATCAACCGTTATCCAAAACGTACAACAATTGTTGATGCAGGTTCAGAATCCAAATCGCTGTATCTGATCC
TTAAAGGTTCAGTATCTATTATTCTGCGTGAAGATGATGAACGTGAAATCGTTGTTGCATATTTGAATCCGGGTGATTTT
TTTGGGGAAATGGGTCTTTTCGAAGCGAATCCACAACGTACTGCTGAAGTCCGCACTCGTGACGTTTGTGAAATTGCTGA
AATTACCTATGAAAATTTTCACGAACTCAGCAAGCAATATCCTGACTTAAGCTACGCTGTGTTTGCTCAGCTTGTGCGTC
GTTTAAAAAACACCACACGCAAAGTAACAGACCTTGCATTTATTGACGTATCCGGTCGTATTGCACGCTGTCTGATTGAT
CTGTCTTCTCAACCAGAAGCAATGATTCTCCCTAACGGTCGTCAGATCCGTATTACCCGTCAGGAAATTGGTCGTATTGT
CGGGTGCTCCCGTGAAATGGTCGGCCGCGTTCTCAAGACCCTGGAAGAACAGGGAATGATTGAAACTGATGGTAAAGCTA
TCCTGATTTTTGATGTATCTTTAGAACAGAATGAAGTTTCTGAAGATGAATTTGATGAAGAAGATTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7LYD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

92.34

100

0.923
  crp Vibrio cholerae strain A1552

47.317

87.234

0.413
  crp Haemophilus influenzae Rd KW20

47.668

82.128

0.391

Multiple sequence alignment