Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   E3156_RS00380 Genome accession   NZ_CP038389
Coordinates   81629..82219 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli O55:H7 strain DEC5B     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 76629..87219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3156_RS00360 (E3156_00385) ilvN 77921..78211 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  E3156_RS00365 (E3156_00390) - 78474..79127 (+) 654 WP_000168036.1 hypothetical protein -
  E3156_RS00370 (E3156_00395) - 79274..79756 (+) 483 WP_000229984.1 hypothetical protein -
  E3156_RS00375 (E3156_00400) - 80364..81467 (+) 1104 WP_024201819.1 hypothetical protein -
  E3156_RS00380 (E3156_00405) letA 81629..82219 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  E3156_RS00385 (E3156_00410) uhpB 82219..83721 (+) 1503 WP_001358729.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  E3156_RS00390 (E3156_00415) uhpC 83731..85050 (+) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  E3156_RS00395 (E3156_00420) uhpT 85188..86579 (+) 1392 WP_000879194.1 hexose-6-phosphate:phosphate antiporter -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=313745 E3156_RS00380 WP_000633668.1 81629..82219(+) (letA) [Escherichia coli O55:H7 strain DEC5B]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=313745 E3156_RS00380 WP_000633668.1 81629..82219(+) (letA) [Escherichia coli O55:H7 strain DEC5B]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGTGGCTTTCTCTCCAAGCGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACAGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCACTAACCAAACGTGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGTATGTTTGATGGCTGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(136-191)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393
  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393
  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378