Detailed information NTG0313692

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D1115_RS03015
• Genome accession: NZ_CP032093
• Coordinates: 581557..582426 (-)
• Length: 289 a.a.
• NCBI ID: WP_128810216.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain CAIM 1831
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 576557..587426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1115_RS02980 (D1115_02985)	rpsP	577660..577908 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
D1115_RS02985 (D1115_02990)	rimM	577936..578484 (+)	549	WP_128810210.1	ribosome maturation factor RimM	-
D1115_RS02990 (D1115_02995)	trmD	578512..579255 (+)	744	WP_128810211.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
D1115_RS02995 (D1115_03000)	rplS	579297..579650 (+)	354	WP_128810212.1	50S ribosomal protein L19	-
D1115_RS03000 (D1115_03005)	yacG	579917..580111 (-)	195	WP_128810213.1	DNA gyrase inhibitor YacG	-
D1115_RS03005 (D1115_03010)	zapD	580175..580915 (-)	741	WP_128810214.1	cell division protein ZapD	-
D1115_RS03010 (D1115_03015)	coaE	580942..581556 (-)	615	WP_128810215.1	dephospho-CoA kinase	-
D1115_RS03015 (D1115_03020)	pilD	581557..582426 (-)	870	WP_128810216.1	prepilin peptidase	Machinery gene
D1115_RS03020 (D1115_03025)	pilC	582491..583714 (-)	1224	WP_128810217.1	type II secretion system F family protein	Machinery gene
D1115_RS03025 (D1115_03030)	pilB	583748..585433 (-)	1686	WP_128810218.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D1115_RS03030 (D1115_03035)	-	585454..585906 (-)	453	WP_128810219.1	pilin	-
D1115_RS03035 (D1115_03040)	nadC	586130..587017 (-)	888	WP_128810220.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32458.68 Da
• Isoelectric Point: 7.0185

>NTDB_id=313692 D1115_RS03015 WP_128810216.1 581557..582426(-) (pilD) [Vibrio alfacsensis strain CAIM 1831]
MEVFLYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMEIEWRHECAESFPEYKIQAPTEKLTLSVPRSSCQQCGTPIRVR
DNIPVISWLLLKGKCHNCQSSISVRYPLIELLTALCSGFLAFYFGFSYFTIALIFFTFVLIAATFIDLDTMLLPDQLTLP
LMWSGIALALTGISPISLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSIVGI
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGEQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=313692 D1115_RS03015 WP_128810216.1 581557..582426(-) (pilD) [Vibrio alfacsensis strain CAIM 1831]
ATGGAAGTATTCCTGTACTACCCATGGCTATTCGTTGTATTTGCCACGATTTTCGGTTTAATCGTGGGAAGTTTCCTCAA
CGTTGTTATTTATCGCCTACCAAAAATCATGGAAATCGAATGGCGACACGAGTGTGCGGAATCTTTTCCTGAATACAAAA
TTCAAGCGCCAACGGAGAAGCTGACTCTCAGTGTTCCACGCTCTTCTTGTCAACAATGCGGCACGCCTATTCGTGTTCGA
GACAACATTCCCGTGATTAGCTGGTTATTATTGAAAGGAAAATGCCACAACTGCCAATCTTCGATTAGTGTTCGCTACCC
TCTCATTGAACTTCTCACCGCGCTCTGTTCGGGTTTTCTCGCGTTTTACTTCGGTTTTAGCTACTTCACCATCGCATTAA
TTTTCTTTACCTTTGTACTTATTGCCGCCACATTTATCGATCTTGATACCATGTTGCTGCCAGATCAACTGACCTTGCCT
TTAATGTGGTCAGGCATTGCGCTTGCGCTCACTGGTATTAGTCCTATTAGTTTACAAGATGCCGTCATTGGTGCGATCGC
CGGCTACCTCTGCCTTTGGAGTGTCTATTGGGGGTTCAAACTCCTAACAGGTAAAGAGGGAATGGGATATGGTGATTTCA
AGTTACTCGCCGCGTTAGGAGCTTGGTTAGGTTGGCAATCACTCCCAATGATCATTTTGCTTTCATCAATCGTCGGCATC
ATTTTTGGTCTTATTCAATTACGTTTGCAAAAACAAGGTATCGAAAAAGCTTTTCCATTCGGCCCATACCTAGCAATAGC
AGGTTGGGTAAGCCTAATTTGGGGTGAACAAATTCTAAACTGGTACTTTACGTCAATTTTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-123)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.965	100	0.9
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.399	93.772	0.491
pilD	Acinetobacter nosocomialis M2	52.399	93.772	0.491
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439