Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D2E16_RS10230 | Genome accession | NZ_CP032064 |
| Coordinates | 2100238..2100732 (-) | Length | 164 a.a. |
| NCBI ID | WP_044691714.1 | Uniprot ID | A0A0Z8JN54 |
| Organism | Streptococcus suis strain YSJ17 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2095238..2105732
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D2E16_RS10215 (D2E16_10525) | - | 2098134..2099078 (+) | 945 | WP_002939248.1 | magnesium transporter CorA family protein | - |
| D2E16_RS10220 (D2E16_10530) | - | 2099094..2099750 (+) | 657 | WP_012027735.1 | DUF1129 domain-containing protein | - |
| D2E16_RS10225 (D2E16_10535) | rpsR | 2099966..2100205 (-) | 240 | WP_002939250.1 | 30S ribosomal protein S18 | - |
| D2E16_RS10230 (D2E16_10540) | ssb | 2100238..2100732 (-) | 495 | WP_044691714.1 | single-stranded DNA-binding protein | Machinery gene |
| D2E16_RS10235 (D2E16_10545) | rpsF | 2100744..2101034 (-) | 291 | WP_002942403.1 | 30S ribosomal protein S6 | - |
| D2E16_RS10240 (D2E16_10550) | - | 2101206..2102195 (-) | 990 | WP_044768462.1 | lipoate--protein ligase | - |
| D2E16_RS10245 (D2E16_10555) | lpdA | 2102296..2104056 (-) | 1761 | WP_192369219.1 | dihydrolipoyl dehydrogenase | - |
| D2E16_RS10250 (D2E16_10560) | - | 2104326..2105711 (-) | 1386 | WP_099810409.1 | dihydrolipoamide acetyltransferase | - |
Sequence
Protein
Download Length: 164 a.a. Molecular weight: 18148.89 Da Isoelectric Point: 4.7294
>NTDB_id=313546 D2E16_RS10230 WP_044691714.1 2100238..2100732(-) (ssb) [Streptococcus suis strain YSJ17]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSYASGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSYASGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF
Nucleotide
Download Length: 495 bp
>NTDB_id=313546 D2E16_RS10230 WP_044691714.1 2100238..2100732(-) (ssb) [Streptococcus suis strain YSJ17]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCTGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAACTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCATATGCTAGCGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCTGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAACTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATCCAGACACGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCATATGCTAGCGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.824 |
100 |
0.61 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.977 |
100 |
0.598 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
55.046 |
66.463 |
0.366 |