Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   D2E16_RS08515 Genome accession   NZ_CP032064
Coordinates   1774996..1776000 (-) Length   334 a.a.
NCBI ID   WP_004298830.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1769996..1781000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS08500 (D2E16_08765) - 1770314..1771627 (-) 1314 WP_012027311.1 glycosyltransferase family 4 protein -
  D2E16_RS08505 (D2E16_08770) - 1771628..1772626 (-) 999 WP_024376345.1 glycosyltransferase family 4 protein -
  D2E16_RS08510 (D2E16_08775) - 1772935..1774583 (+) 1649 Protein_1641 Spy0128 family protein -
  D2E16_RS08515 (D2E16_08780) ccpA 1774996..1776000 (-) 1005 WP_004298830.1 catabolite control protein A Regulator
  D2E16_RS08520 (D2E16_08785) - 1776210..1777295 (+) 1086 WP_024384331.1 M24 family metallopeptidase -
  D2E16_RS08525 (D2E16_08790) tgt 1777335..1778477 (-) 1143 WP_029176774.1 tRNA guanosine(34) transglycosylase Tgt -
  D2E16_RS08530 (D2E16_08795) - 1778787..1779629 (+) 843 WP_192368961.1 DUF975 family protein -
  D2E16_RS08535 (D2E16_08800) - 1779925..1780362 (-) 438 WP_014636445.1 CoA-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36786.97 Da        Isoelectric Point: 5.5173

>NTDB_id=313540 D2E16_RS08515 WP_004298830.1 1774996..1776000(-) (ccpA) [Streptococcus suis strain YSJ17]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=313540 D2E16_RS08515 WP_004298830.1 1774996..1776000(-) (ccpA) [Streptococcus suis strain YSJ17]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCGA
ATGCTGTTGCACGTGGCTTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTAAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGACTTGGAGCACCAATTACCT
AGCGTCAATATTGACTATGCTGCTGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCACTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGTTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCAGGTCTATTGAATGGTGTTAGTGATATGGGCATCAAGGT
TCCAGAAGACTTTGAAATCATCACAAGTGATGATTCCCTAGTGACTAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCACTATATGATATTGGTGCAATTGCTATGCGCATGCTTACCAAAATCATGCATAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.88

99.701

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

99.701

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.102

0.584

Multiple sequence alignment