Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   Ahae11616_RS15075 Genome accession   NZ_CP032002
Coordinates   3130748..3132175 (+) Length   475 a.a.
NCBI ID   WP_005087908.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 11616     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125748..3137175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae11616_RS15055 (Ahae11616_15150) thrC 3126032..3127171 (+) 1140 WP_004637599.1 threonine synthase -
  Ahae11616_RS15060 (Ahae11616_15155) pbpG 3127231..3128295 (-) 1065 WP_005087912.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Ahae11616_RS15065 (Ahae11616_15160) - 3128506..3129141 (+) 636 WP_005083960.1 response regulator -
  Ahae11616_RS15070 (Ahae11616_15165) pilS 3129160..3130725 (+) 1566 WP_160124299.1 sensor histidine kinase Regulator
  Ahae11616_RS15075 (Ahae11616_15170) pilR 3130748..3132175 (+) 1428 WP_005087908.1 sigma-54-dependent transcriptional regulator Regulator
  Ahae11616_RS15080 (Ahae11616_15175) - 3132227..3133393 (-) 1167 WP_005087906.1 S41 family peptidase -
  Ahae11616_RS15085 (Ahae11616_15180) gpmI 3133403..3134947 (-) 1545 WP_005087904.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  Ahae11616_RS15090 (Ahae11616_15185) lptG 3135072..3136142 (-) 1071 WP_004637591.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 53448.42 Da        Isoelectric Point: 6.1507

>NTDB_id=313311 Ahae11616_RS15075 WP_005087908.1 3130748..3132175(+) (pilR) [Acinetobacter haemolyticus strain 11616]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVQHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLIQKALNRPRPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQRICQEWELPAKTLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDEAIDLAHLQTAPLRSPISMPSAPSYSQ
EEVEQPQYTSPSTSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=313311 Ahae11616_RS15075 WP_005087908.1 3130748..3132175(+) (pilR) [Acinetobacter haemolyticus strain 11616]
ATGGCAACTAAACAACCACTCGTCTTGCTCGTAGACGACGAAGAGGATTTGTGTCTTCTCATGCAAATGACACTTGCACG
TATGGGAATTAAGACACATTTGGCTTATCGTGTAGAGCAAGCAAAAAAATTCTTTACTGAATTTCAATATGATGCATGTT
TAACTGATTTAAATCTTCCAGACGGCAACGGTTTAGATCTCGTCCAACATGTCACCCAAAATTACCCAAATACTCCGATC
GCTGTGCTGACGGCCTATGGCAATATGGACATTGCGATTGCAGCATTAAAAGCTGGGGCATTTGACTTCGTTAGCAAACC
AGTCAACCAAGTGCATTTGGATCAATTGATTCAAAAAGCATTGAATCGACCACGACCTGAGCAAGAAGCGGCTGAAACAG
CCTTAGAAAATAAACTCCTGATTGGACGTTCTGCGCCAATTCAACAACTGCGCATTGCATTAAAGAAAATCGCGCGATCA
CAAGCGCCTGTCTTTATCACTGGGGAGTCGGGAACTGGAAAAGAAGTTGTTGCCAACTTGGTTCACCGCTTAAGTAATCG
TAGTGAAGGGCCTTTTATTGCCATAAACTGCGGTGCAATTCCAACAGAACTGATGGAAAGCGAGCTTTTCGGGCACAAAA
AAGGCAGTTTCACTGGGGCGACCCAAGATAAACAAGGTTTAATTTTATCAGCACATGGCGGTAGTTTATTTCTCGATGAA
ATCGCTGAACTGCCACTCAACATGCAAGTAAAATTATTGCGTGCAGTGCAAGAAAAGAAAATCCGCCCTGTAGGCTCAGA
CCAAGAAATTGATGTCGATTTCCGTGTGATTAGTGCCAGTCACCAAGATCTTGAGTTACTGGTTCAGCAAGGACGATTCC
GACAGGATTTATTTTTCCGTATCCACGTTATGGATATTGTACTCCCACCATTACGTGAACGTGGACAGGACATCCTGTTA
TTAGCGAATCATTTTATCCAAAGAATTTGCCAAGAATGGGAACTGCCTGCCAAGACGTTATCGTCTCGTGCAGAGCAATT
TTTATTACAACAATATTTTCCTGGTAATGTGCGCGAACTACGCAATATTATTGAACGTGCGATCACGCTCAGCGATGATG
AAGCGATTGATCTAGCGCACTTACAAACAGCGCCATTACGCAGTCCAATTTCAATGCCATCAGCGCCATCTTATAGCCAA
GAAGAAGTTGAGCAGCCACAATACACCAGCCCAAGCACAAGTTCGAAAAAACTTCCACCTGAAGGTTTAGAGCGTTATTT
AGAAAATATTGAAAAAGAAGTGCTACTTAATGCATTAAATCTAACCCATTGGAATCGAACGCTCGCCGCGAAGAAACTCG
GGATGACCTTCCGTTCTTTGCGTTATCGTTTGAAAAAATTCGGATTAGATACTGAAGAAGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-467)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.067

100

0.844
  pilR Pseudomonas aeruginosa PAK

51.62

97.474

0.503

Multiple sequence alignment