Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   Ahae11616_RS15070 Genome accession   NZ_CP032002
Coordinates   3129160..3130725 (+) Length   521 a.a.
NCBI ID   WP_160124299.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 11616     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3124160..3135725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae11616_RS15050 (Ahae11616_15145) - 3124672..3125973 (+) 1302 WP_005087913.1 homoserine dehydrogenase -
  Ahae11616_RS15055 (Ahae11616_15150) thrC 3126032..3127171 (+) 1140 WP_004637599.1 threonine synthase -
  Ahae11616_RS15060 (Ahae11616_15155) pbpG 3127231..3128295 (-) 1065 WP_005087912.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  Ahae11616_RS15065 (Ahae11616_15160) - 3128506..3129141 (+) 636 WP_005083960.1 response regulator -
  Ahae11616_RS15070 (Ahae11616_15165) pilS 3129160..3130725 (+) 1566 WP_160124299.1 sensor histidine kinase Regulator
  Ahae11616_RS15075 (Ahae11616_15170) pilR 3130748..3132175 (+) 1428 WP_005087908.1 sigma-54-dependent transcriptional regulator Regulator
  Ahae11616_RS15080 (Ahae11616_15175) - 3132227..3133393 (-) 1167 WP_005087906.1 S41 family peptidase -
  Ahae11616_RS15085 (Ahae11616_15180) gpmI 3133403..3134947 (-) 1545 WP_005087904.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59468.57 Da        Isoelectric Point: 6.5501

>NTDB_id=313310 Ahae11616_RS15070 WP_160124299.1 3129160..3130725(+) (pilS) [Acinetobacter haemolyticus strain 11616]
MLGKVASSVSQTIYQLGMWYSGYRLIISVCLLLIFLLTAEQLTTNYLYPTLYSYTLIVYIALNVSQLLFLKLFPTHVNKQ
LIAIFLVDVICLSTITFATGGPNLQLSLLYVIIIFASAILLNAQLSLVVTLLAVIMIVYQRFLGNLFDYNNLNHLSNSLL
LVFLFLVVYAIGRIAVQRFKILEALTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAAITLLGIHLPVSHE
KTPLIKWQPDLFELIKFSDLEDGEEFTFESQQSLYTVHVRVKHLVVPEQALVLLILKDAQKLTQRVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFNESDAHQQQMLTRMIRKQAKRIDRIVEDTLAMARNKPTEPQNIHLVEFFESLFEEDLVDVK
HMIQLELSENIQILFDDKQLRQVLINLVRNALRHNASDIPYIEIKVHAEETKVRIDVIDFGLGVAKRDLSQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLTYVERQQGACFRIECSIIN

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=313310 Ahae11616_RS15070 WP_160124299.1 3129160..3130725(+) (pilS) [Acinetobacter haemolyticus strain 11616]
ATGTTGGGAAAAGTTGCATCTTCGGTGTCACAAACCATTTACCAGCTTGGGATGTGGTATAGCGGATATCGCCTCATTAT
TTCCGTATGCCTATTGCTCATTTTCTTGTTAACTGCTGAGCAACTGACCACCAATTATCTTTACCCAACATTGTATTCAT
ATACGCTGATTGTCTATATTGCATTAAATGTCAGTCAGCTTTTATTTCTTAAATTATTTCCGACCCACGTGAATAAACAG
CTGATTGCGATCTTTCTCGTCGATGTCATCTGTTTAAGTACCATTACCTTTGCAACAGGCGGGCCAAACTTACAGCTCAG
TTTGCTCTATGTCATTATTATTTTTGCCTCGGCAATTTTATTGAATGCTCAGCTTTCTCTAGTGGTAACGCTGCTCGCTG
TTATCATGATTGTGTATCAGCGTTTTCTGGGAAATTTATTTGACTACAACAATTTAAACCATCTCAGTAATAGCCTGCTG
TTGGTATTTTTATTCTTGGTGGTATATGCCATAGGGCGCATTGCAGTACAGCGTTTTAAAATTTTAGAAGCGCTTACTTT
TCATCAATCCATTGAAATTCATCAACTCCAAAACATTAACCGTTATATCTTGGAGCAAATTGAGGATGGATATCTGGTTT
TAGATGAAAGTAATCATATTGTTTTAACCAATCCTGCTGCCATTACATTATTAGGCATTCATTTACCTGTTTCCCATGAA
AAAACGCCCTTAATCAAATGGCAACCCGATCTATTTGAACTGATCAAATTCAGTGACCTAGAAGATGGTGAAGAGTTCAC
TTTTGAGTCACAACAAAGTTTGTATACCGTCCATGTACGTGTCAAACATTTGGTCGTACCTGAACAAGCATTAGTTTTAT
TAATTCTCAAAGATGCTCAGAAATTAACTCAGCGTGTACAACAACTTAAACTCGCAGCGCTCGGACAACTTTCTGCCAGT
ATTGCACATGAAATTCGCAATCCTTTAGCCGCGATTGTGCAAGCCAATGAGCTGTTTAATGAAAGCGATGCGCATCAACA
ACAAATGCTCACTCGTATGATTCGTAAACAAGCAAAACGTATCGATCGGATTGTAGAAGATACTTTGGCAATGGCACGCA
ATAAACCGACTGAACCACAAAATATTCATCTTGTGGAGTTCTTTGAAAGTTTATTTGAAGAGGATCTAGTCGATGTCAAA
CACATGATCCAATTAGAGCTTTCAGAGAATATTCAAATCTTATTTGATGACAAACAGTTGCGCCAAGTGCTGATCAATTT
GGTGAGAAATGCATTAAGACACAACGCATCGGATATACCTTATATCGAAATTAAAGTACACGCTGAAGAGACTAAAGTTC
GAATTGATGTTATCGATTTTGGTTTAGGGGTAGCAAAAAGAGACCTTTCTCAACTGTTTAAACCATTTTTTAGTACCGAA
ATCAAAGGAACTGGTTTAGGATTGTATTTGTCTCATAGTTTCTGTGAGGCGAATCATGCAAAGCTCACTTATGTAGAGCG
ACAACAAGGAGCATGCTTCAGGATTGAATGCTCAATAATTAATTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.631

98.848

0.649

Multiple sequence alignment