Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Ahae11616_RS13105 Genome accession   NZ_CP032002
Coordinates   2722161..2722586 (-) Length   141 a.a.
NCBI ID   WP_005092347.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 11616     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2717161..2727586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae11616_RS13075 (Ahae11616_13170) - 2717243..2717512 (-) 270 WP_004637957.1 HPr family phosphocarrier protein -
  Ahae11616_RS13080 (Ahae11616_13175) rapZ 2717509..2718360 (-) 852 WP_004637956.1 RNase adapter RapZ -
  Ahae11616_RS13085 (Ahae11616_13180) panC 2718389..2719234 (-) 846 WP_004637955.1 pantoate--beta-alanine ligase -
  Ahae11616_RS13090 (Ahae11616_13185) panB 2719238..2720047 (-) 810 WP_004637954.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  Ahae11616_RS13095 (Ahae11616_13190) folK 2720087..2720575 (-) 489 WP_004637953.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  Ahae11616_RS13100 (Ahae11616_13195) pcnB 2720572..2722023 (-) 1452 WP_004637952.1 polynucleotide adenylyltransferase PcnB -
  Ahae11616_RS13105 (Ahae11616_13200) comEA 2722161..2722586 (-) 426 WP_005092347.1 ComEA family DNA-binding protein Machinery gene
  Ahae11616_RS13110 (Ahae11616_13205) mazG 2722555..2723361 (-) 807 WP_005092344.1 nucleoside triphosphate pyrophosphohydrolase -
  Ahae11616_RS13115 (Ahae11616_13210) - 2723458..2724162 (+) 705 Protein_2566 SDR family oxidoreductase -
  Ahae11616_RS13120 (Ahae11616_13220) - 2724210..2725142 (-) 933 WP_017396695.1 IS5-like element IS17 family transposase -
  Ahae11616_RS13125 (Ahae11616_13225) - 2725196..2725282 (+) 87 Protein_2568 short-chain dehydrogenase -
  Ahae11616_RS13130 (Ahae11616_13230) - 2725765..2726466 (+) 702 WP_004282344.1 IS1 family transposase -
  Ahae11616_RS13135 (Ahae11616_13235) - 2726466..2726852 (+) 387 WP_118903198.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16196.73 Da        Isoelectric Point: 10.6493

>NTDB_id=313303 Ahae11616_RS13105 WP_005092347.1 2722161..2722586(-) (comEA) [Acinetobacter haemolyticus strain 11616]
MKLPQLRSKTNFLLLIILWLGVIPQLNAKQFDQSYIQWKTQQQKHDQQLARQDDQYYLSRPTQQQNVKPVSSSVNISGDK
ISLNQANLQQLQSLSGVGEKKAQAIIEYRQKHGAFKALDELMNVKGIGPKLLEKNRSRLIL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=313303 Ahae11616_RS13105 WP_005092347.1 2722161..2722586(-) (comEA) [Acinetobacter haemolyticus strain 11616]
ATGAAATTGCCGCAGTTACGCAGCAAAACTAACTTTTTATTATTGATTATTTTATGGTTGGGGGTAATTCCCCAGCTCAA
TGCTAAACAGTTTGATCAATCCTATATACAATGGAAAACACAGCAACAAAAACATGATCAGCAATTGGCTAGACAAGATG
ACCAATATTATTTATCTAGACCGACCCAGCAACAAAATGTGAAACCTGTTTCATCTTCTGTAAATATTTCAGGCGATAAA
ATTAGCTTAAATCAAGCGAACTTACAGCAGTTGCAAAGTTTAAGTGGTGTAGGTGAGAAAAAAGCCCAAGCGATTATTGA
ATATCGACAAAAACATGGTGCATTTAAAGCATTAGATGAACTCATGAATGTCAAAGGAATTGGGCCGAAACTGCTTGAAA
AGAATAGGTCGAGACTTATTTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(79-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

50.37

95.745

0.482
  comEA Acinetobacter baumannii D1279779

48.507

95.035

0.461
  comEA Acinetobacter baylyi ADP1

44.118

96.454

0.426

Multiple sequence alignment