Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   Ahae5227_RS13860 Genome accession   NZ_CP031988
Coordinates   2883847..2884272 (-) Length   141 a.a.
NCBI ID   WP_005092347.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain 5227     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2878847..2889272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ahae5227_RS13830 (Ahae5227_13985) - 2878929..2879198 (-) 270 WP_004637957.1 HPr family phosphocarrier protein -
  Ahae5227_RS13835 (Ahae5227_13990) rapZ 2879195..2880046 (-) 852 WP_004637956.1 RNase adapter RapZ -
  Ahae5227_RS13840 (Ahae5227_13995) panC 2880075..2880920 (-) 846 WP_004637955.1 pantoate--beta-alanine ligase -
  Ahae5227_RS13845 (Ahae5227_14000) panB 2880924..2881733 (-) 810 WP_004637954.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  Ahae5227_RS13850 (Ahae5227_14005) folK 2881773..2882261 (-) 489 WP_004637953.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  Ahae5227_RS13855 (Ahae5227_14010) pcnB 2882258..2883709 (-) 1452 WP_004637952.1 polynucleotide adenylyltransferase PcnB -
  Ahae5227_RS13860 (Ahae5227_14015) comEA 2883847..2884272 (-) 426 WP_005092347.1 ComEA family DNA-binding protein Machinery gene
  Ahae5227_RS13865 (Ahae5227_14020) mazG 2884241..2885047 (-) 807 WP_005092344.1 nucleoside triphosphate pyrophosphohydrolase -
  Ahae5227_RS13870 (Ahae5227_14025) - 2885144..2885782 (+) 639 Protein_2717 SDR family oxidoreductase -
  Ahae5227_RS13875 (Ahae5227_14030) - 2885840..2886772 (+) 933 WP_017396695.1 IS5-like element IS17 family transposase -
  Ahae5227_RS13880 (Ahae5227_14035) - 2886828..2886968 (+) 141 Protein_2719 short-chain dehydrogenase -
  Ahae5227_RS13890 (Ahae5227_14045) - 2888603..2888932 (+) 330 WP_228277818.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16196.73 Da        Isoelectric Point: 10.6493

>NTDB_id=313180 Ahae5227_RS13860 WP_005092347.1 2883847..2884272(-) (comEA) [Acinetobacter haemolyticus strain 5227]
MKLPQLRSKTNFLLLIILWLGVIPQLNAKQFDQSYIQWKTQQQKHDQQLARQDDQYYLSRPTQQQNVKPVSSSVNISGDK
ISLNQANLQQLQSLSGVGEKKAQAIIEYRQKHGAFKALDELMNVKGIGPKLLEKNRSRLIL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=313180 Ahae5227_RS13860 WP_005092347.1 2883847..2884272(-) (comEA) [Acinetobacter haemolyticus strain 5227]
ATGAAATTGCCGCAGTTACGCAGCAAAACTAACTTTTTATTATTGATTATTTTATGGTTGGGGGTAATTCCCCAGCTCAA
TGCTAAACAGTTTGATCAATCCTATATACAATGGAAAACACAGCAACAAAAACATGATCAGCAATTGGCTAGACAAGATG
ACCAATATTATTTATCTAGACCGACCCAGCAACAAAATGTGAAACCTGTTTCATCTTCTGTAAATATTTCAGGCGATAAA
ATTAGCTTAAATCAAGCGAACTTACAGCAGTTGCAAAGTTTAAGTGGTGTAGGTGAGAAAAAAGCCCAAGCGATTATTGA
ATATCGACAAAAACATGGTGCATTTAAAGCATTAGATGAACTCATGAATGTCAAAGGAATTGGGCCGAAACTGCTTGAAA
AGAATAGGTCGAGACTTATTTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(79-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

50.37

95.745

0.482
  comEA Acinetobacter baumannii D1279779

48.507

95.035

0.461
  comEA Acinetobacter baylyi ADP1

44.118

96.454

0.426

Multiple sequence alignment