Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AhaeAN4_RS03560 Genome accession   NZ_CP031979
Coordinates   722682..723107 (+) Length   141 a.a.
NCBI ID   WP_005092347.1    Uniprot ID   -
Organism   Acinetobacter haemolyticus strain AN4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 717490..724696 722682..723107 within 0


Gene organization within MGE regions


Location: 717490..724696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AhaeAN4_RS03525 (AhaeAN4_03570) - 717490..718044 (-) 555 Protein_688 IS1 family transposase -
  AhaeAN4_RS03530 (AhaeAN4_03575) - 718096..719315 (+) 1220 WP_087486619.1 IS3-like element ISAba19 family transposase -
  AhaeAN4_RS03535 (AhaeAN4_03580) - 719354..719503 (-) 150 Protein_690 IS1 family transposase -
  AhaeAN4_RS03540 (AhaeAN4_03585) - 719986..720126 (-) 141 Protein_691 short-chain dehydrogenase -
  AhaeAN4_RS03545 (AhaeAN4_03590) - 720182..721114 (-) 933 WP_160132032.1 IS5-like element IS17 family transposase -
  AhaeAN4_RS03550 (AhaeAN4_03595) - 721172..721810 (-) 639 Protein_693 SDR family oxidoreductase -
  AhaeAN4_RS03555 (AhaeAN4_03600) mazG 721907..722713 (+) 807 WP_005092344.1 nucleoside triphosphate pyrophosphohydrolase -
  AhaeAN4_RS03560 (AhaeAN4_03605) comEA 722682..723107 (+) 426 WP_005092347.1 ComEA family DNA-binding protein Machinery gene
  AhaeAN4_RS03565 (AhaeAN4_03610) pcnB 723245..724696 (+) 1452 WP_004637952.1 polynucleotide adenylyltransferase PcnB -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16196.73 Da        Isoelectric Point: 10.6493

>NTDB_id=313082 AhaeAN4_RS03560 WP_005092347.1 722682..723107(+) (comEA) [Acinetobacter haemolyticus strain AN4]
MKLPQLRSKTNFLLLIILWLGVIPQLNAKQFDQSYIQWKTQQQKHDQQLARQDDQYYLSRPTQQQNVKPVSSSVNISGDK
ISLNQANLQQLQSLSGVGEKKAQAIIEYRQKHGAFKALDELMNVKGIGPKLLEKNRSRLIL

Nucleotide


Download         Length: 426 bp        

>NTDB_id=313082 AhaeAN4_RS03560 WP_005092347.1 722682..723107(+) (comEA) [Acinetobacter haemolyticus strain AN4]
ATGAAATTGCCGCAGTTACGCAGCAAAACTAACTTTTTATTATTGATTATTTTATGGTTGGGGGTAATTCCCCAGCTCAA
TGCTAAACAGTTTGATCAATCCTATATACAATGGAAAACACAGCAACAAAAACATGATCAGCAATTGGCTAGACAAGATG
ACCAATATTATTTATCTAGACCGACCCAGCAACAAAATGTGAAACCTGTTTCATCTTCTGTAAATATTTCAGGCGATAAA
ATTAGCTTAAATCAAGCGAACTTACAGCAGTTGCAAAGTTTAAGTGGTGTAGGTGAGAAAAAAGCCCAAGCGATTATTGA
ATATCGACAAAAACATGGTGCATTTAAAGCATTAGATGAACTCATGAATGTCAAAGGAATTGGGCCGAAACTGCTTGAAA
AGAATAGGTCGAGACTTATTTTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(79-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

50.37

95.745

0.482
  comEA Acinetobacter baumannii D1279779

48.507

95.035

0.461
  comEA Acinetobacter baylyi ADP1

44.118

96.454

0.426

Multiple sequence alignment