Detailed information NTG0312975

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: D1345_RS22840
• Genome accession: NZ_CP031968
• Coordinates: 4956638..4957969 (-)
• Length: 443 a.a.
• NCBI ID: WP_019103405.1
• Uniprot ID: A0AAD0RUG0
• Organism: Chromobacterium rhizoryzae strain JP2-74
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4951638..4962969

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D1345_RS22815 (D1345_22815)	-	4951947..4952972 (-)	1026	WP_162897155.1	ABC transporter substrate-binding protein	-
D1345_RS22820 (D1345_22820)	alr	4953099..4954328 (+)	1230	WP_043593469.1	alanine racemase	-
D1345_RS22825 (D1345_22825)	-	4954446..4954739 (+)	294	WP_019102311.1	hypothetical protein	-
D1345_RS22830 (D1345_22830)	-	4954944..4955159 (-)	216	WP_043593468.1	YdcH family protein	-
D1345_RS22835 (D1345_22835)	-	4955492..4956250 (-)	759	WP_019103406.1	ABC transporter substrate-binding protein	-
D1345_RS22840 (D1345_22840)	pilR	4956638..4957969 (-)	1332	WP_019103405.1	sigma-54 dependent transcriptional regulator	Regulator
D1345_RS22845 (D1345_22845)	-	4957962..4959515 (-)	1554	WP_052052223.1	ATP-binding protein	-
D1345_RS22850 (D1345_22850)	parC	4959512..4961881 (-)	2370	WP_118268514.1	DNA topoisomerase IV subunit A	-
D1345_RS22855 (D1345_22855)	-	4962048..4962515 (+)	468	WP_019101209.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 443 a.a.
• Molecular weight: 48923.03 Da
• Isoelectric Point: 5.2923

>NTDB_id=312975 D1345_RS22840 WP_019103405.1 4956638..4957969(-) (pilR) [Chromobacterium rhizoryzae strain JP2-74]
MAKSSLRVLVIDDEPDIRELLELTLIKMGLDVATAASVGAAKLSLNSQPFDLALTDMRLPDGEGIEVVRHIAEQGLDVPI
AVITAYGNTDNAVLAMKAGAFDYLQKPVSLAQLRSLVKSVLRVDNGKTEAAVRLDGESPAIQEALRLIGKLARSQAAVYV
SGESGTGKEQAARMIHEHSARSERPFIPVNCGAIPETLMESEFFGYRKGAFTGADNDRDGFFQQANGGTLFLDEVADLPL
AMQVKLLRAIQEKKVRRLGNAQEEAVDVRIICATHKDLAARVDAGNFRQDLYYRLNVLPLRMPPLRELREDLPRYIASLL
ERFSPDEKPRLAPAALKALLEYNYPGNFRELENILERAVALANDARIELQDLQLLPSDHAGQGDGEAPTCADGEALQDFL
DRVEREAILKALESTRFNRTQAAKMLGVTFRSMRYRMERLGIK

Nucleotide

• Length: 1332 bp

>NTDB_id=312975 D1345_RS22840 WP_019103405.1 4956638..4957969(-) (pilR) [Chromobacterium rhizoryzae strain JP2-74]
ATGGCTAAATCTTCCCTGCGCGTGCTGGTGATCGACGACGAACCGGACATCCGCGAACTGCTGGAACTGACCCTGATCAA
GATGGGTCTGGACGTGGCCACCGCCGCCAGCGTCGGCGCCGCCAAACTCAGCCTGAACAGCCAGCCCTTCGACCTGGCGC
TGACCGATATGCGCCTGCCGGACGGCGAGGGCATCGAAGTGGTGCGTCATATCGCCGAACAGGGCCTGGACGTGCCCATC
GCGGTGATCACCGCCTACGGCAACACCGACAACGCGGTGCTGGCGATGAAGGCCGGCGCCTTCGACTACCTGCAAAAACC
GGTCAGTCTGGCGCAATTGCGCAGTCTGGTGAAATCCGTGCTGCGTGTGGACAACGGCAAAACCGAGGCCGCGGTGCGGC
TCGACGGCGAATCGCCGGCGATCCAGGAAGCGCTGCGCTTGATCGGCAAGCTGGCGCGCAGTCAGGCCGCGGTTTACGTC
AGCGGCGAATCCGGCACCGGCAAGGAACAGGCGGCGCGGATGATACACGAGCACAGCGCGCGCTCCGAACGGCCGTTCAT
CCCGGTCAACTGCGGCGCCATCCCGGAAACGCTGATGGAAAGCGAATTCTTCGGCTACCGCAAAGGCGCGTTCACCGGCG
CCGACAACGACCGCGACGGTTTCTTCCAGCAAGCCAACGGCGGCACGCTGTTTCTGGACGAAGTGGCCGACCTGCCGCTG
GCGATGCAGGTCAAACTGCTGCGCGCGATTCAGGAAAAGAAAGTGCGCCGCCTGGGCAACGCCCAGGAAGAAGCGGTGGA
CGTGCGCATCATCTGCGCCACCCACAAGGACCTGGCGGCGCGGGTAGACGCCGGCAACTTTCGCCAGGACCTGTACTACC
GGCTAAATGTGCTGCCGCTGCGCATGCCGCCGCTGCGCGAACTGCGCGAGGATCTGCCGCGCTACATCGCCAGCCTGCTG
GAACGCTTTTCCCCCGACGAAAAGCCGCGGCTGGCGCCCGCGGCGCTCAAAGCCTTGCTGGAATACAACTATCCGGGTAA
TTTCCGCGAACTGGAAAACATCCTGGAACGCGCGGTGGCCCTGGCCAACGACGCCCGTATTGAATTGCAGGATCTGCAAC
TGCTGCCGAGCGATCACGCCGGCCAGGGCGATGGCGAGGCGCCGACCTGCGCCGACGGCGAAGCGCTGCAGGACTTTCTA
GACCGCGTGGAACGCGAAGCCATCCTCAAGGCGCTGGAGAGCACTCGCTTCAATCGCACCCAGGCCGCCAAGATGCTAGG
CGTCACCTTCAGATCGATGCGCTATCGGATGGAAAGACTGGGCATCAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (400-439)

• Sigma-54 interaction domain (Sigma54_activat) (136-300)

• Response regulator receiver domain (Response_reg) (8-117)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.202	100	0.585
pilR	Acinetobacter baumannii strain A118	45.376	100	0.476
luxO	Vibrio cholerae strain A1552	37.162	100	0.372