Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   D1E88_RS07390 Genome accession   NZ_CP031886
Coordinates   1532002..1532448 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN082783     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527002..1537448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1E88_RS07360 (D1E88_07525) gcvPA 1527928..1529274 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  D1E88_RS07365 (D1E88_07530) gcvT 1529294..1530385 (-) 1092 WP_000093344.1 glycine cleavage system aminomethyltransferase GcvT -
  D1E88_RS07370 (D1E88_07535) - 1530544..1531068 (-) 525 WP_001015120.1 shikimate kinase -
  D1E88_RS07375 (D1E88_07540) - 1531058..1531204 (-) 147 WP_001789879.1 hypothetical protein -
  D1E88_RS07380 (D1E88_07545) comGF 1531301..1531798 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  D1E88_RS07385 (D1E88_07550) comGE 1531716..1532015 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  D1E88_RS07390 (D1E88_07555) comGD 1532002..1532448 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  D1E88_RS07395 (D1E88_07560) comGC 1532426..1532737 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  D1E88_RS07400 (D1E88_07565) comGB 1532751..1533821 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  D1E88_RS07405 (D1E88_07570) comGA 1533793..1534767 (-) 975 WP_000697223.1 competence type IV pilus ATPase ComGA Machinery gene
  D1E88_RS07410 (D1E88_07575) - 1534819..1535442 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  D1E88_RS07415 (D1E88_07580) - 1535439..1535768 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  D1E88_RS07420 (D1E88_07585) - 1535768..1536754 (-) 987 WP_000161307.1 ROK family glucokinase -
  D1E88_RS07425 (D1E88_07590) - 1536751..1536954 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=312409 D1E88_RS07390 WP_001796473.1 1532002..1532448(-) (comGD) [Staphylococcus aureus strain CFSAN082783]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=312409 D1E88_RS07390 WP_001796473.1 1532002..1532448(-) (comGD) [Staphylococcus aureus strain CFSAN082783]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment