Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D1O36_RS08600 Genome accession   NZ_CP031881
Coordinates   1602992..1603510 (-) Length   172 a.a.
NCBI ID   WP_002951905.1    Uniprot ID   A0A0P6V0E7
Organism   Streptococcus thermophilus strain ST106     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1597992..1608510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O36_RS08580 (D1O36_08605) - 1599900..1600844 (+) 945 WP_134973488.1 magnesium transporter CorA family protein -
  D1O36_RS08585 (D1O36_08610) - 1600915..1601586 (+) 672 WP_011226546.1 DUF1129 domain-containing protein -
  D1O36_RS08590 (D1O36_08615) - 1601703..1602584 (+) 882 WP_134973489.1 DUF4300 family protein -
  D1O36_RS08595 (D1O36_08620) rpsR 1602711..1602950 (-) 240 WP_002945024.1 30S ribosomal protein S18 -
  D1O36_RS08600 (D1O36_08625) ssb 1602992..1603510 (-) 519 WP_002951905.1 single-stranded DNA-binding protein Machinery gene
  D1O36_RS08605 (D1O36_08630) rpsF 1603522..1603812 (-) 291 WP_002951906.1 30S ribosomal protein S6 -
  D1O36_RS08610 (D1O36_08635) - 1604031..1604984 (+) 954 WP_082309135.1 hypothetical protein -
  D1O36_RS08615 (D1O36_08640) mutY 1605902..1607053 (+) 1152 WP_134973490.1 A/G-specific adenine glycosylase -
  D1O36_RS08620 (D1O36_08645) - 1607380..1607601 (-) 222 WP_011681628.1 hypothetical protein -
  D1O36_RS08625 (D1O36_08650) - 1607734..1607946 (-) 213 WP_011226552.1 hypothetical protein -
  D1O36_RS08630 (D1O36_08655) - 1607949..1608263 (-) 315 WP_232085769.1 hypothetical protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18680.41 Da        Isoelectric Point: 4.7482

>NTDB_id=312352 D1O36_RS08600 WP_002951905.1 1602992..1603510(-) (ssb) [Streptococcus thermophilus strain ST106]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNVGGFDNSNSFGGGASTGGSFGESQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=312352 D1O36_RS08600 WP_002951905.1 1602992..1603510(-) (ssb) [Streptococcus thermophilus strain ST106]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTACACACCAAGTAATGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAATCGTAACTTTAAAGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAGGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGTGCATTGGTTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCATAGTGGTGGTTCATACAACGTTGGAGGATTTGATAACTCAAATTCATTCGGTGGTGGAGCTTCCA
CTGGTGGTTCGTTTGGTGAATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAAAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0P6V0E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.621

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.984

100

0.366

Multiple sequence alignment