Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   D1O36_RS07100 Genome accession   NZ_CP031881
Coordinates   1313149..1314642 (-) Length   497 a.a.
NCBI ID   WP_065972442.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST106     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1294679..1364531 1313149..1314642 within 0


Gene organization within MGE regions


Location: 1294679..1364531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O36_RS07010 (D1O36_07040) liaF 1294687..1295384 (-) 698 Protein_1307 cell wall-active antibiotics response protein LiaF -
  D1O36_RS10815 - 1295650..1295805 (-) 156 WP_011226290.1 ion channel -
  D1O36_RS07020 (D1O36_07050) stkP/pknB 1296442..1298313 (-) 1872 WP_024009998.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  D1O36_RS07025 (D1O36_07055) - 1298313..1299050 (-) 738 WP_134973348.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  D1O36_RS07030 (D1O36_07060) rsmB 1299094..1300415 (-) 1322 Protein_1311 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  D1O36_RS07035 (D1O36_07065) fmt 1300405..1301340 (-) 936 WP_002951411.1 methionyl-tRNA formyltransferase -
  D1O36_RS07040 (D1O36_07070) - 1301358..1303754 (-) 2397 WP_134973349.1 primosomal protein N' -
  D1O36_RS07045 (D1O36_07075) rpoZ 1303896..1304210 (-) 315 WP_041829315.1 DNA-directed RNA polymerase subunit omega -
  D1O36_RS07050 (D1O36_07080) gmk 1304232..1304861 (-) 630 WP_002951416.1 guanylate kinase -
  D1O36_RS07055 (D1O36_07085) ftsY 1305087..1306478 (-) 1392 WP_134973350.1 signal recognition particle-docking protein FtsY -
  D1O36_RS07060 (D1O36_07090) - 1306492..1307307 (-) 816 WP_002951420.1 Cof-type HAD-IIB family hydrolase -
  D1O36_RS07065 (D1O36_07095) - 1307300..1308094 (-) 795 WP_024010002.1 HAD family hydrolase -
  D1O36_RS07070 (D1O36_07100) - 1308279..1308656 (+) 378 WP_024010003.1 GntR family transcriptional regulator -
  D1O36_RS07075 (D1O36_07105) - 1308661..1309359 (+) 699 WP_134973351.1 ABC transporter ATP-binding protein -
  D1O36_RS07080 (D1O36_07110) - 1309371..1310156 (+) 786 WP_002951425.1 hypothetical protein -
  D1O36_RS07085 (D1O36_07115) amiF 1310206..1311135 (-) 930 WP_011681415.1 ATP-binding cassette domain-containing protein Regulator
  D1O36_RS07090 (D1O36_07120) amiE 1311128..1312213 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  D1O36_RS07095 (D1O36_07125) amiD 1312223..1313149 (-) 927 WP_134973352.1 oligopeptide ABC transporter permease OppC Regulator
  D1O36_RS07100 (D1O36_07130) amiC 1313149..1314642 (-) 1494 WP_065972442.1 ABC transporter permease Regulator
  D1O36_RS07105 (D1O36_07135) amiA 1314704..1316671 (-) 1968 WP_134973353.1 peptide ABC transporter substrate-binding protein Regulator
  D1O36_RS07110 (D1O36_07140) - 1317027..1318278 (+) 1252 Protein_1327 ISL3 family transposase -
  D1O36_RS07115 (D1O36_07145) amiA3 1318323..1320296 (-) 1974 WP_134973354.1 peptide ABC transporter substrate-binding protein Regulator
  D1O36_RS07120 (D1O36_07150) - 1320502..1320692 (-) 191 Protein_1329 IS3 family transposase -
  D1O36_RS11230 (D1O36_07155) amiF 1320683..1320853 (-) 171 WP_014608546.1 hypothetical protein Regulator
  D1O36_RS11235 - 1320869..1321441 (-) 573 Protein_1331 TatD family hydrolase -
  D1O36_RS07140 (D1O36_07170) - 1321786..1322991 (+) 1206 WP_011227415.1 OFA family MFS transporter -
  D1O36_RS10385 (D1O36_07175) - 1323038..1324391 (-) 1354 Protein_1333 IS3 family transposase -
  D1O36_RS07150 (D1O36_07180) pta 1324477..1325460 (-) 984 WP_134973355.1 phosphate acetyltransferase -
  D1O36_RS07155 (D1O36_07185) - 1325474..1326370 (-) 897 WP_011226316.1 RluA family pseudouridine synthase -
  D1O36_RS07160 (D1O36_07190) - 1326367..1327203 (-) 837 WP_065972449.1 NAD kinase -
  D1O36_RS07165 (D1O36_07195) - 1327175..1327849 (-) 675 WP_011681427.1 GTP pyrophosphokinase family protein -
  D1O36_RS07170 (D1O36_07200) - 1327945..1328520 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  D1O36_RS07175 (D1O36_07205) - 1328885..1329856 (+) 972 WP_002951446.1 ribose-phosphate diphosphokinase -
  D1O36_RS07180 (D1O36_07210) - 1329860..1330971 (+) 1112 Protein_1340 cysteine desulfurase family protein -
  D1O36_RS07185 (D1O36_07215) - 1330973..1331320 (+) 348 WP_002948028.1 DUF1831 domain-containing protein -
  D1O36_RS07190 (D1O36_07220) - 1331464..1332123 (+) 660 WP_071417293.1 redox-sensing transcriptional repressor Rex -
  D1O36_RS07195 (D1O36_07225) - 1332116..1332811 (+) 696 WP_002951449.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  D1O36_RS07200 (D1O36_07230) radC 1332864..1333550 (-) 687 WP_011226324.1 DNA repair protein RadC -
  D1O36_RS07205 (D1O36_07235) - 1333599..1335383 (-) 1785 WP_134973356.1 rhamnan synthesis F family protein -
  D1O36_RS07210 (D1O36_07240) - 1335380..1336435 (-) 1056 WP_002948022.1 glycosyltransferase -
  D1O36_RS07215 (D1O36_07245) - 1336455..1337660 (-) 1206 WP_113870315.1 ABC transporter ATP-binding protein -
  D1O36_RS07220 (D1O36_07250) - 1337660..1338469 (-) 810 WP_002948020.1 ABC transporter permease -
  D1O36_RS07225 (D1O36_07255) - 1338453..1339409 (-) 957 WP_011226328.1 glycosyltransferase family 2 protein -
  D1O36_RS07230 (D1O36_07260) - 1339406..1340554 (-) 1149 WP_041828290.1 glycosyltransferase family 1 protein -
  D1O36_RS07235 (D1O36_07265) - 1340661..1342202 (-) 1542 WP_134973357.1 DUF2142 domain-containing protein -
  D1O36_RS07240 (D1O36_07270) - 1342209..1343213 (-) 1005 WP_100284794.1 glycosyltransferase family A protein -
  D1O36_RS07245 (D1O36_07275) - 1343213..1344487 (-) 1275 WP_134973359.1 lipopolysaccharide biosynthesis protein -
  D1O36_RS07250 (D1O36_07280) - 1344480..1344812 (-) 333 WP_011226332.1 DUF2304 domain-containing protein -
  D1O36_RS07255 (D1O36_07285) - 1344818..1345513 (-) 696 WP_173405413.1 glycosyltransferase family 2 protein -
  D1O36_RS07260 (D1O36_07290) rfbD 1345588..1346439 (-) 852 WP_002951456.1 dTDP-4-dehydrorhamnose reductase -
  D1O36_RS07265 (D1O36_07295) - 1346524..1347997 (-) 1474 Protein_1357 glucosyltransferase domain-containing protein -
  D1O36_RS07270 (D1O36_07300) - 1348002..1348928 (-) 927 WP_134973361.1 glycosyltransferase family 2 protein -
  D1O36_RS07275 (D1O36_07305) - 1348939..1349274 (-) 336 WP_002891474.1 metal-sulfur cluster assembly factor -
  D1O36_RS07280 (D1O36_07310) rpoD 1349328..1350437 (-) 1110 WP_011227440.1 RNA polymerase sigma factor RpoD -
  D1O36_RS07285 (D1O36_07315) dnaG 1350441..1352252 (-) 1812 WP_011681448.1 DNA primase -
  D1O36_RS07290 (D1O36_07320) mscL 1352392..1352475 (+) 84 Protein_1362 large conductance mechanosensitive channel protein MscL -
  D1O36_RS07295 (D1O36_07325) rpsU 1352635..1352811 (-) 177 WP_011681449.1 30S ribosomal protein S21 -
  D1O36_RS07300 (D1O36_07330) - 1353006..1353800 (-) 795 WP_023909836.1 ABC transporter substrate-binding protein -
  D1O36_RS07305 (D1O36_07335) - 1353862..1354971 (-) 1110 WP_024703959.1 aminotransferase -
  D1O36_RS07310 (D1O36_07340) - 1355318..1356115 (-) 798 WP_134973363.1 transporter substrate-binding domain-containing protein -
  D1O36_RS07315 (D1O36_07345) - 1356112..1356942 (-) 831 WP_134973364.1 transporter substrate-binding domain-containing protein -
  D1O36_RS07320 (D1O36_07350) - 1357155..1357619 (-) 465 WP_134973366.1 8-oxo-dGTP diphosphatase -
  D1O36_RS07325 (D1O36_07355) uvrB 1357664..1359655 (-) 1992 WP_002953358.1 excinuclease ABC subunit UvrB -
  D1O36_RS11240 (D1O36_07365) - 1360347..1361284 (-) 938 Protein_1370 type II CAAX endopeptidase family protein -
  D1O36_RS07340 (D1O36_07370) - 1361483..1363693 (+) 2211 WP_134973368.1 ABC transporter substrate-binding protein/permease -
  D1O36_RS07345 (D1O36_07375) - 1363693..1364433 (+) 741 WP_002945131.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55649.53 Da        Isoelectric Point: 10.0972

>NTDB_id=312344 D1O36_RS07100 WP_065972442.1 1313149..1314642(-) (amiC) [Streptococcus thermophilus strain ST106]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=312344 D1O36_RS07100 WP_065972442.1 1313149..1314642(-) (amiC) [Streptococcus thermophilus strain ST106]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTACTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTCGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

99.598

100

0.996
  amiC Streptococcus thermophilus LMG 18311

99.598

100

0.996
  amiC Streptococcus salivarius strain HSISS4

96.982

100

0.97

Multiple sequence alignment