Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   D1O36_RS05620 Genome accession   NZ_CP031881
Coordinates   1025077..1025886 (-) Length   269 a.a.
NCBI ID   WP_024704147.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST106     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1020077..1030886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O36_RS05595 (D1O36_05625) - 1021015..1021401 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  D1O36_RS05600 (D1O36_05630) - 1021459..1022371 (-) 913 Protein_1033 GNAT family N-acetyltransferase -
  D1O36_RS05605 (D1O36_05635) yidA 1022579..1023388 (+) 810 WP_011226081.1 sugar-phosphatase -
  D1O36_RS05610 (D1O36_05640) - 1023390..1024604 (+) 1215 WP_002953123.1 aminoacyltransferase -
  D1O36_RS05615 (D1O36_05645) - 1024656..1025017 (-) 362 Protein_1036 YbaN family protein -
  D1O36_RS05620 (D1O36_05650) vicX 1025077..1025886 (-) 810 WP_024704147.1 MBL fold metallo-hydrolase Regulator
  D1O36_RS05625 (D1O36_05655) vicK 1025895..1027235 (-) 1341 WP_134973270.1 cell wall metabolism sensor histidine kinase VicK Regulator
  D1O36_RS05630 (D1O36_05660) vicR 1027228..1027935 (-) 708 WP_011681206.1 response regulator YycF Regulator
  D1O36_RS05635 (D1O36_05665) - 1028462..1029229 (+) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  D1O36_RS05640 (D1O36_05670) - 1029241..1030074 (+) 834 WP_134973271.1 transporter substrate-binding domain-containing protein -
  D1O36_RS05645 (D1O36_05675) - 1030092..1030790 (+) 699 WP_014608374.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29943.90 Da        Isoelectric Point: 5.5779

>NTDB_id=312334 D1O36_RS05620 WP_024704147.1 1025077..1025886(-) (vicX) [Streptococcus thermophilus strain ST106]
MSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGMD
IYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMAG
LIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTMEN
QLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=312334 D1O36_RS05620 WP_024704147.1 1025077..1025886(-) (vicX) [Streptococcus thermophilus strain ST106]
ATCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGAAAA
GAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTGATC
TTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATGGAT
ATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACATAT
TTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCTATTGATCCAC
AATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCTGGT
CTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTGGTC
AACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCGGTA
ATAAAACTAAAAAGATTTATCTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAAAAT
CAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACTAAC
AGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781

Multiple sequence alignment