Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D1104_RS04680 | Genome accession | NZ_CP031863 |
| Coordinates | 1029026..1029472 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae serovar 11 str. 56153 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1024026..1034472
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1104_RS04655 (D1104_04695) | yacG | 1024933..1025121 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| D1104_RS04660 (D1104_04700) | coaE | 1025103..1025741 (-) | 639 | WP_005597390.1 | dephospho-CoA kinase | - |
| D1104_RS04665 (D1104_04705) | - | 1025763..1026401 (-) | 639 | WP_005597392.1 | prepilin peptidase | - |
| D1104_RS04670 (D1104_04710) | pilC | 1026428..1027630 (-) | 1203 | WP_005597394.1 | type II secretion system F family protein | Machinery gene |
| D1104_RS04675 (D1104_04715) | pilB | 1027614..1029008 (-) | 1395 | WP_005597396.1 | GspE/PulE family protein | Machinery gene |
| D1104_RS04680 (D1104_04720) | pilA | 1029026..1029472 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| D1104_RS04685 (D1104_04725) | radA | 1029654..1031033 (+) | 1380 | WP_005597398.1 | DNA repair protein RadA | - |
| D1104_RS04690 (D1104_04730) | - | 1031077..1031310 (-) | 234 | WP_005597399.1 | YgjV family protein | - |
| D1104_RS04695 (D1104_04735) | folA | 1031437..1031925 (-) | 489 | WP_005597400.1 | type 3 dihydrofolate reductase | - |
| D1104_RS04700 (D1104_04740) | proB | 1032012..1033103 (+) | 1092 | WP_005597401.1 | glutamate 5-kinase | - |
| D1104_RS04705 (D1104_04745) | - | 1033116..1033892 (+) | 777 | WP_005597402.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=312102 D1104_RS04680 WP_005597397.1 1029026..1029472(-) (pilA) [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=312102 D1104_RS04680 WP_005597397.1 1029026..1029472(-) (pilA) [Actinobacillus pleuropneumoniae serovar 11 str. 56153]
ATGCAAAAATTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAATTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |