Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   STER_RS02400 Genome accession   NC_008532
Coordinates   435022..435981 (+) Length   319 a.a.
NCBI ID   WP_011680817.1    Uniprot ID   A0A2S4DVC0
Organism   Streptococcus thermophilus LMD-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 430022..440981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STER_RS02380 (STER_0485) metG 430547..432550 (+) 2004 WP_011680815.1 methionine--tRNA ligase -
  STER_RS02385 (STER_0486) - 432828..433724 (-) 897 WP_011680816.1 LysR family transcriptional regulator -
  STER_RS02400 (STER_0488) coiA 435022..435981 (+) 960 WP_011680817.1 competence protein CoiA Machinery gene
  STER_RS02405 (STER_0489) pepF 435992..437797 (+) 1806 WP_011680818.1 oligoendopeptidase F Regulator
  STER_RS02410 (STER_0491) - 437979..438686 (+) 708 WP_023909440.1 O-methyltransferase -
  STER_RS02415 (STER_0492) - 438748..439890 (+) 1143 WP_011680821.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 38070.95 Da        Isoelectric Point: 9.1721

>NTDB_id=312 STER_RS02400 WP_011680817.1 435022..435981(+) (coiA) [Streptococcus thermophilus LMD-9]
MLIAKNQKGLLVSALENGLNREETYRCPGCQGIVLLRQGKVICPHFAHKSLQDCQFFSENESAQHLSLKATVYQSLDNHG
ERVCIEKVLPELGQIADLFVGDSLALEVQCSRLSQKRLRERTLAYHQIGYEVRWLLGQELWLGQRLTDLQRDFLYFTTKI
GFHLWELDWEREEIRLKYLIYEDIFGRVYYLTKTWSLIENLMTILRFPYQARKVETYQVTQRKKVSHVIQRELMGKNPRW
MRRQEEAYLKGMNLLSLSDQDFFPQVRFPESKHGFVQIRLSIDGFEKLFMQYYRKRDFSYKQTLCPPNFYAKIVDYRHN

Nucleotide


Download         Length: 960 bp        

>NTDB_id=312 STER_RS02400 WP_011680817.1 435022..435981(+) (coiA) [Streptococcus thermophilus LMD-9]
ATGTTAATCGCTAAAAATCAGAAAGGGCTCTTGGTTTCGGCTCTTGAAAATGGGTTGAATCGTGAGGAAACTTATAGGTG
CCCTGGCTGTCAAGGAATTGTATTGTTGAGACAGGGAAAGGTGATATGCCCGCATTTTGCCCATAAATCTTTGCAGGATT
GTCAGTTTTTCTCAGAAAATGAATCGGCCCAACATTTATCCCTAAAAGCTACTGTGTATCAATCCCTGGACAATCATGGT
GAAAGAGTTTGTATTGAAAAGGTTCTGCCTGAGTTAGGTCAGATTGCGGATTTATTCGTTGGAGATTCCTTAGCCTTGGA
AGTCCAGTGTTCTCGTTTATCACAGAAACGTTTAAGAGAGCGGACTTTAGCTTACCATCAAATAGGTTACGAGGTGCGAT
GGCTTTTGGGGCAAGAACTGTGGTTGGGACAGCGTTTAACAGATCTACAGCGTGATTTTCTTTATTTTACAACTAAGATA
GGTTTCCACCTCTGGGAACTTGATTGGGAGAGGGAAGAGATTAGACTTAAGTATCTCATCTATGAGGATATTTTTGGGAG
AGTTTATTACTTAACTAAGACCTGGTCTTTAATAGAAAATCTCATGACCATATTACGTTTTCCTTATCAGGCCAGAAAGG
TGGAGACTTATCAAGTGACTCAGCGAAAGAAAGTTTCACATGTTATTCAACGGGAATTAATGGGGAAAAATCCAAGATGG
ATGAGAAGGCAGGAGGAGGCTTATCTTAAAGGGATGAATTTGTTAAGTTTGTCCGATCAGGATTTTTTTCCACAAGTGCG
GTTTCCTGAGTCTAAGCATGGATTTGTCCAAATTAGATTATCTATTGATGGTTTTGAAAAGCTTTTCATGCAGTATTATC
GAAAAAGGGATTTTTCTTACAAGCAAACCCTGTGCCCTCCCAACTTTTATGCTAAAATAGTAGATTATAGACACAATTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S4DVC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae TIGR4

45.338

97.492

0.442
  coiA Streptococcus mitis NCTC 12261

45.338

97.492

0.442
  coiA Streptococcus pneumoniae Rx1

45.016

97.492

0.439
  coiA Streptococcus pneumoniae D39

45.016

97.492

0.439
  coiA Streptococcus pneumoniae R6

45.016

97.492

0.439

Multiple sequence alignment