Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D1108_RS04410 | Genome accession | NZ_CP031859 |
| Coordinates | 990105..990551 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae strain HS143 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 985105..995551
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1108_RS04385 (D1108_04390) | yacG | 986012..986200 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| D1108_RS04390 (D1108_04395) | coaE | 986182..986820 (-) | 639 | WP_237593619.1 | dephospho-CoA kinase | - |
| D1108_RS04395 (D1108_04400) | - | 986842..987480 (-) | 639 | WP_005604550.1 | prepilin peptidase | - |
| D1108_RS04400 (D1108_04405) | pilC | 987507..988709 (-) | 1203 | WP_012263006.1 | type II secretion system F family protein | Machinery gene |
| D1108_RS04405 (D1108_04410) | pilB | 988693..990087 (-) | 1395 | WP_237593620.1 | GspE/PulE family protein | Machinery gene |
| D1108_RS04410 (D1108_04415) | pilA | 990105..990551 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| D1108_RS04415 (D1108_04420) | radA | 990733..992112 (+) | 1380 | WP_005601211.1 | DNA repair protein RadA | Machinery gene |
| D1108_RS04420 (D1108_04425) | - | 992156..992389 (-) | 234 | WP_237593621.1 | YgjV family protein | - |
| D1108_RS04425 (D1108_04430) | folA | 992519..993007 (-) | 489 | WP_237593622.1 | type 3 dihydrofolate reductase | - |
| D1108_RS04430 (D1108_04435) | proB | 993094..994185 (+) | 1092 | WP_237593623.1 | glutamate 5-kinase | - |
| D1108_RS04435 (D1108_04440) | - | 994198..994974 (+) | 777 | WP_005597402.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=311998 D1108_RS04410 WP_005597397.1 990105..990551(-) (pilA) [Actinobacillus pleuropneumoniae strain HS143]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=311998 D1108_RS04410 WP_005597397.1 990105..990551(-) (pilA) [Actinobacillus pleuropneumoniae strain HS143]
ATGCAAAAATTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAATTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |