Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HYN24_RS14585 Genome accession   NZ_CP031842
Coordinates   3033995..3034369 (-) Length   124 a.a.
NCBI ID   WP_117609935.1    Uniprot ID   -
Organism   Dechloromonas sp. HYN0024     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3028995..3039369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN24_RS14570 (HYN24_14570) - 3030938..3033058 (-) 2121 WP_117609932.1 methyl-accepting chemotaxis protein -
  HYN24_RS14575 (HYN24_14575) - 3033097..3033609 (-) 513 WP_117609933.1 chemotaxis protein CheW -
  HYN24_RS14580 (HYN24_14580) - 3033615..3033980 (-) 366 WP_117609934.1 PleD family two-component system response regulator -
  HYN24_RS14585 (HYN24_14585) pilG 3033995..3034369 (-) 375 WP_117609935.1 PleD family two-component system response regulator Regulator
  HYN24_RS14590 (HYN24_14590) - 3034607..3035479 (+) 873 WP_117609936.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  HYN24_RS14595 (HYN24_14595) thiE 3035469..3036098 (+) 630 WP_117609937.1 thiamine phosphate synthase -
  HYN24_RS14600 (HYN24_14600) hemL 3036095..3037378 (+) 1284 WP_117609938.1 glutamate-1-semialdehyde 2,1-aminomutase -
  HYN24_RS14605 (HYN24_14605) sugE 3037375..3037713 (+) 339 WP_117609939.1 quaternary ammonium compound efflux SMR transporter SugE -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13695.80 Da        Isoelectric Point: 6.4490

>NTDB_id=311776 HYN24_RS14585 WP_117609935.1 3033995..3034369(-) (pilG) [Dechloromonas sp. HYN0024]
MVIDDSNTIRRSAEIFLVQAGCQVVLAEDGFDALAKIADHHPSVIFCDIMMPRLDGYQTCSLIKKNPRFKATPVIMLSSK
DGLFDRARGRMVGSDQYLTKPFTKDSLLQTVATFALPAESEPNS

Nucleotide


Download         Length: 375 bp        

>NTDB_id=311776 HYN24_RS14585 WP_117609935.1 3033995..3034369(-) (pilG) [Dechloromonas sp. HYN0024]
ATGGTCATCGACGATAGCAACACGATACGGCGCAGCGCCGAGATTTTTCTCGTCCAGGCCGGGTGTCAGGTTGTTCTTGC
CGAAGATGGATTCGATGCGCTGGCCAAGATTGCCGACCATCATCCCAGCGTGATCTTTTGCGACATCATGATGCCGCGCC
TCGACGGCTACCAGACCTGTTCGCTGATCAAGAAGAATCCGCGCTTCAAGGCCACGCCGGTCATCATGCTTTCGTCCAAG
GACGGGCTGTTCGATCGGGCGCGCGGTCGCATGGTCGGCTCCGACCAGTACCTGACCAAGCCATTTACCAAGGATAGCCT
GCTCCAGACGGTGGCGACGTTTGCCCTGCCGGCCGAGTCAGAGCCCAATTCGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

65.766

89.516

0.589
  pilH Synechocystis sp. PCC 6803

40.541

89.516

0.363

Multiple sequence alignment