Detailed information NTG0311766

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HYN24_RS03115
• Genome accession: NZ_CP031842
• Coordinates: 646876..648231 (+)
• Length: 451 a.a.
• NCBI ID: WP_117607913.1
• Uniprot ID: A0A3B7A4E1
• Organism: Dechloromonas sp. HYN0024
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 641876..653231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HYN24_RS03100 (HYN24_03100)	-	642150..644255 (-)	2106	WP_117607910.1	hypothetical protein	-
HYN24_RS03105 (HYN24_03105)	-	645078..645308 (+)	231	WP_117607911.1	PP0621 family protein	-
HYN24_RS03110 (HYN24_03110)	-	645308..646918 (+)	1611	WP_117607912.1	PAS domain-containing sensor histidine kinase	-
HYN24_RS03115 (HYN24_03115)	pilR	646876..648231 (+)	1356	WP_117607913.1	sigma-54 dependent transcriptional regulator	Regulator
HYN24_RS03120 (HYN24_03120)	ampD	648231..648797 (+)	567	WP_117607914.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
HYN24_RS03125 (HYN24_03125)	-	648774..649934 (-)	1161	WP_117610181.1	pyridoxal phosphate-dependent aminotransferase	-
HYN24_RS03130 (HYN24_03130)	-	649999..651843 (-)	1845	WP_117607915.1	phosphoenolpyruvate carboxykinase (GTP)	-

Sequence

Protein

• Length: 451 a.a.
• Molecular weight: 49469.77 Da
• Isoelectric Point: 5.0359

>NTDB_id=311766 HYN24_RS03115 WP_117607913.1 646876..648231(+) (pilR) [Dechloromonas sp. HYN0024]
MSGGRIERRPRGELSRVLVIDDEPDIRELIDLTLARMGLATECVGSVAEARAALASDVFQLCLTDMRLPDGDGLEIVRCI
AESHPQTPVAVITAYGSAENAVAALKAGAFDYLAKPVGLEQLRTLVKAALRLPGGEPDGEPSLQALIGESPSMQQVRAMI
EKLARSQAPIYISGESGSGKELAARLIHGRSARAVGTFVPVNCGAIPENLMESEFFGYRKGAFTGADSEREGFFQAAHGG
TLFLDEVADLPLAMQVKLLRAIQEKRVRKVGSVAEEPVDVRIICATHRNLRDLVDKGSFRQDLYYRLNVIELRMPPLRER
MEDIVPLVEVILRRVYGDMPPKLSTGALKALAYYSFPGNVRELENILERATALCSGDLIEVEDLHLGPEEMSGSEDQGRG
SETLDEYLNRLERLAILEALQKSEGNRTAAARLLGVTFRSMRYRLERLGIE

Nucleotide

• Length: 1356 bp

>NTDB_id=311766 HYN24_RS03115 WP_117607913.1 646876..648231(+) (pilR) [Dechloromonas sp. HYN0024]
GTGTCTGGTGGCAGAATCGAACGGCGCCCAAGGGGCGAACTGAGCCGGGTCCTCGTCATTGACGACGAGCCCGATATTCG
CGAACTGATCGATTTGACCCTGGCCCGCATGGGCCTGGCGACCGAGTGTGTCGGCTCGGTAGCGGAGGCACGAGCCGCCC
TGGCCAGCGATGTATTCCAGCTCTGTCTGACGGATATGCGGTTGCCCGATGGCGATGGGCTGGAGATCGTTCGCTGCATT
GCCGAGTCTCATCCGCAGACGCCGGTCGCCGTGATAACCGCCTACGGTAGCGCCGAAAACGCGGTTGCTGCACTCAAGGC
CGGTGCTTTTGATTATCTCGCCAAGCCGGTTGGCCTCGAGCAGTTGCGCACCCTGGTCAAGGCGGCTTTGCGCCTGCCCG
GTGGCGAGCCAGATGGCGAGCCGTCGTTGCAGGCACTGATTGGCGAATCGCCGAGCATGCAGCAGGTGCGGGCGATGATC
GAAAAGCTGGCGCGCAGCCAGGCACCCATCTATATTTCCGGAGAGTCAGGCAGCGGCAAGGAACTGGCCGCACGCCTGAT
CCATGGTCGCAGTGCGCGTGCGGTGGGGACCTTCGTCCCCGTCAACTGCGGGGCGATTCCCGAAAATCTCATGGAAAGTG
AGTTCTTTGGCTATCGCAAAGGGGCGTTTACCGGTGCGGATAGCGAACGCGAAGGATTTTTCCAGGCGGCGCATGGTGGC
ACCTTGTTTCTCGACGAGGTGGCCGATCTGCCGCTCGCCATGCAAGTCAAACTTTTGCGGGCCATTCAGGAAAAGCGGGT
ACGCAAGGTAGGGAGTGTGGCCGAGGAGCCGGTCGATGTCCGCATCATCTGCGCGACGCACCGAAATTTGCGTGACCTGG
TCGATAAAGGCAGCTTCCGTCAGGACTTGTATTACCGACTCAACGTTATCGAACTGCGCATGCCACCGCTGCGTGAGCGG
ATGGAGGATATCGTGCCCTTGGTCGAGGTCATCCTGCGCCGAGTGTACGGTGATATGCCGCCCAAGCTGTCGACCGGAGC
GCTCAAGGCGCTGGCGTACTACTCCTTCCCCGGCAACGTCCGCGAACTTGAAAATATTCTCGAACGGGCGACTGCCCTTT
GTTCCGGCGACCTCATTGAAGTCGAGGATCTGCACCTCGGCCCGGAAGAGATGTCGGGTAGCGAGGATCAGGGACGGGGC
AGCGAAACGCTGGACGAATACCTCAATCGCCTGGAACGTCTGGCTATTCTTGAAGCCTTGCAGAAATCCGAAGGAAATCG
AACCGCTGCGGCTCGCCTGCTCGGGGTTACCTTCCGCTCAATGCGCTACCGGCTTGAGCGCCTGGGTATCGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (146-312)

• Response regulator receiver domain (Response_reg) (17-126)

• Bacterial regulatory protein, Fis family (HTH_8) (410-447)

3D structure

• AlphaFold DB: A0A3B7A4E1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.586	98.448	0.596
pilR	Acinetobacter baumannii strain A118	45.969	100	0.468
luxO	Vibrio cholerae strain A1552	36.937	98.448	0.364