Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D1O27_RS08260 Genome accession   NZ_CP031839
Coordinates   1548577..1549449 (-) Length   290 a.a.
NCBI ID   WP_000931872.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NX-T55     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1543577..1554449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1O27_RS08250 (D1O27_08250) trmFO 1544865..1546172 (-) 1308 WP_000195260.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  D1O27_RS08255 (D1O27_08255) topA 1546328..1548403 (-) 2076 WP_001557331.1 type I DNA topoisomerase -
  D1O27_RS08260 (D1O27_08260) dprA 1548577..1549449 (-) 873 WP_000931872.1 DNA-processing protein DprA Machinery gene
  D1O27_RS08265 (D1O27_08265) sucD 1549773..1550681 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  D1O27_RS08270 (D1O27_08270) sucC 1550703..1551869 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  D1O27_RS08275 (D1O27_08275) - 1551978..1552745 (-) 768 WP_000176406.1 ribonuclease HII -
  D1O27_RS08280 (D1O27_08280) ylqF 1552729..1553613 (-) 885 WP_000236718.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33212.51 Da        Isoelectric Point: 8.3112

>NTDB_id=311742 D1O27_RS08260 WP_000931872.1 1548577..1549449(-) (dprA) [Staphylococcus aureus strain NX-T55]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLLSYPHTLAVVGSRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=311742 D1O27_RS08260 WP_000931872.1 1548577..1549449(-) (dprA) [Staphylococcus aureus strain NX-T55]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
AAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCCTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGTCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.677

100

0.686
  dprA Staphylococcus aureus N315

66.897

100

0.669
  dprA Lactococcus lactis subsp. cremoris KW2

38.214

96.552

0.369
  dprA Vibrio campbellii strain DS40M4

38.745

93.448

0.362

Multiple sequence alignment