Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D0819_RS11710 Genome accession   NZ_CP031784
Coordinates   2227881..2228525 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain HMNig-2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2222881..2233525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0819_RS11675 (D0819_11710) mrpB 2224073..2224504 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  D0819_RS11680 (D0819_11715) mrpC 2224504..2224845 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  D0819_RS11685 (D0819_11720) mrpD 2224838..2226319 (+) 1482 WP_153257006.1 Na+/H+ antiporter subunit D -
  D0819_RS11690 (D0819_11725) mrpE 2226325..2226801 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  D0819_RS11695 (D0819_11730) mrpF 2226801..2227085 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  D0819_RS11700 (D0819_11735) mnhG 2227069..2227443 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  D0819_RS11705 (D0819_11740) yuxO 2227482..2227862 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  D0819_RS11710 (D0819_11745) comA 2227881..2228525 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  D0819_RS11715 (D0819_11750) comP 2228606..2230917 (-) 2312 Protein_2312 two-component system sensor histidine kinase ComP -
  D0819_RS11720 (D0819_11755) comX 2230934..2231107 (-) 174 WP_021480497.1 competence pheromone ComX -
  D0819_RS11725 (D0819_11760) comQ 2231123..2231989 (-) 867 WP_021480498.1 polyprenyl synthetase family protein Regulator
  D0819_RS11730 (D0819_11765) degQ 2232174..2232314 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  D0819_RS21725 - 2232536..2232598 (+) 63 Protein_2316 hypothetical protein -
  D0819_RS11735 (D0819_11770) - 2232776..2233144 (+) 369 WP_038828672.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=311393 D0819_RS11710 WP_003220716.1 2227881..2228525(-) (comA) [Bacillus subtilis strain HMNig-2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=311393 D0819_RS11710 WP_003220716.1 2227881..2228525(-) (comA) [Bacillus subtilis strain HMNig-2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTATCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment