Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   D0808_RS20580 Genome accession   NZ_CP031783
Coordinates   4007478..4008167 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4002478..4013167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS20545 (D0808_20695) flgN 4002658..4003140 (-) 483 WP_014481048.1 flagellar protein FlgN -
  D0808_RS20550 (D0808_20700) flgM 4003156..4003422 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  D0808_RS20555 (D0808_20705) yvyF 4003503..4003922 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  D0808_RS20560 (D0808_20710) comFC 4003995..4004717 (-) 723 WP_153256547.1 comF operon protein ComFC Machinery gene
  D0808_RS20565 (D0808_20715) comFB 4004681..4004977 (-) 297 WP_015483764.1 late competence protein ComFB -
  D0808_RS20570 (D0808_20720) comFA 4005037..4006428 (-) 1392 WP_153256548.1 ATP-dependent helicase ComFA Machinery gene
  D0808_RS20575 (D0808_20725) fakBA 4006535..4007380 (-) 846 WP_003227986.1 DegV family protein -
  D0808_RS20580 (D0808_20730) degU 4007478..4008167 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D0808_RS20585 (D0808_20735) degS 4008250..4009407 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  D0808_RS20590 (D0808_20740) yvyE 4009624..4010277 (+) 654 WP_003227979.1 YigZ family protein -
  D0808_RS20595 (D0808_20745) tagV 4010277..4011452 (+) 1176 WP_153256549.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  D0808_RS20600 (D0808_20750) tagO 4011524..4012600 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=311340 D0808_RS20580 WP_003219701.1 4007478..4008167(-) (degU) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=311340 D0808_RS20580 WP_003219701.1 4007478..4008167(-) (degU) [Bacillus subtilis strain MENO2 voucher National Research Centre]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment