Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   D0808_RS20570 Genome accession   NZ_CP031783
Coordinates   4005037..4006428 (-) Length   463 a.a.
NCBI ID   WP_153256548.1    Uniprot ID   -
Organism   Bacillus subtilis strain MENO2 voucher National Research Centre     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4000037..4011428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0808_RS20535 (D0808_20685) flgL 4000209..4001105 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  D0808_RS20540 (D0808_20690) flgK 4001116..4002639 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  D0808_RS20545 (D0808_20695) flgN 4002658..4003140 (-) 483 WP_014481048.1 flagellar protein FlgN -
  D0808_RS20550 (D0808_20700) flgM 4003156..4003422 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  D0808_RS20555 (D0808_20705) yvyF 4003503..4003922 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  D0808_RS20560 (D0808_20710) comFC 4003995..4004717 (-) 723 WP_153256547.1 comF operon protein ComFC Machinery gene
  D0808_RS20565 (D0808_20715) comFB 4004681..4004977 (-) 297 WP_015483764.1 late competence protein ComFB -
  D0808_RS20570 (D0808_20720) comFA 4005037..4006428 (-) 1392 WP_153256548.1 ATP-dependent helicase ComFA Machinery gene
  D0808_RS20575 (D0808_20725) fakBA 4006535..4007380 (-) 846 WP_003227986.1 DegV family protein -
  D0808_RS20580 (D0808_20730) degU 4007478..4008167 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D0808_RS20585 (D0808_20735) degS 4008250..4009407 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  D0808_RS20590 (D0808_20740) yvyE 4009624..4010277 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52627.70 Da        Isoelectric Point: 9.8739

>NTDB_id=311339 D0808_RS20570 WP_153256548.1 4005037..4006428(-) (comFA) [Bacillus subtilis strain MENO2 voucher National Research Centre]
MKVPTEKNISFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRDVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=311339 D0808_RS20570 WP_153256548.1 4005037..4006428(-) (comFA) [Bacillus subtilis strain MENO2 voucher National Research Centre]
GTGAAGGTGCCAACTGAAAAGAACATTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTATTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGATGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACAGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

97.624

100

0.976

Multiple sequence alignment