Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   E4U64_RS00380 Genome accession   NZ_CP038287
Coordinates   81598..82188 (+) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli O157:H7 strain TX 376-2     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 76598..87188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4U64_RS00360 (E4U64_00380) ilvN 77889..78179 (+) 291 WP_001181706.1 acetolactate synthase small subunit -
  E4U64_RS00365 (E4U64_00385) - 78442..79095 (+) 654 WP_000168040.1 hypothetical protein -
  E4U64_RS00370 (E4U64_00390) - 79243..79725 (+) 483 WP_128484496.1 hypothetical protein -
  E4U64_RS00375 (E4U64_00400) - 80333..81436 (+) 1104 WP_001089794.1 hypothetical protein -
  E4U64_RS00380 (E4U64_00405) letA 81598..82188 (+) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  E4U64_RS00385 (E4U64_00410) uhpB 82188..83690 (+) 1503 WP_001303725.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  E4U64_RS00390 (E4U64_00415) uhpC 83700..85019 (+) 1320 WP_001301991.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  E4U64_RS00395 (E4U64_00420) uhpT 85157..86548 (+) 1392 WP_171888286.1 hexose-6-phosphate:phosphate antiporter -

Sequence


Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=310989 E4U64_RS00380 WP_000633668.1 81598..82188(+) (letA) [Escherichia coli O157:H7 strain TX 376-2]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=310989 E4U64_RS00380 WP_000633668.1 81598..82188(+) (letA) [Escherichia coli O157:H7 strain TX 376-2]
ATGATCACCGTTGCCCTTATAGACGATCACCTCATCGTCCGCTCCGGCTTTGCGCAGTTGCTGGGGCTGGAACCTGATTT
GCAAGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCCGATATCTCCGGTCTGGAGCTGCTAAGCCAGCTGCCGAAAGGTATGGCGACAATTATGCTCTCCGTT
CATGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGTGGCTTTCTCTCCAAGCGTTGTAGCCCTGACGA
ACTGATTGCTGCGGTGCATACGGTTGCCACAGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCCGGTC
GCCAGGACCCACTAACCAAACGTGAACGGCAGGTGGCGGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCACCGAAAACGGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGTATGTTTGATGGCTGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393

  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393

  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378