Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   SaO408_RS08875 Genome accession   NZ_CP038270
Coordinates   1781212..1782201 (-) Length   329 a.a.
NCBI ID   WP_000219064.1    Uniprot ID   -
Organism   Staphylococcus aureus strain O408 isolate B115     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1776212..1787201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SaO408_RS08860 (SaO408_1646) acsA 1777413..1779119 (-) 1707 WP_120672857.1 acetate--CoA ligase -
  SaO408_RS08865 (SaO408_1647) - 1779288..1779920 (+) 633 WP_001016000.1 GNAT family N-acetyltransferase -
  SaO408_RS08870 (SaO408_1648) - 1779945..1781114 (+) 1170 WP_001184002.1 acetoin utilization protein AcuC -
  SaO408_RS08875 (SaO408_1649) ccpA 1781212..1782201 (-) 990 WP_000219064.1 catabolite control protein A Regulator
  SaO408_RS08880 - 1782274..1782387 (-) 114 WP_001803513.1 hypothetical protein -
  SaO408_RS08885 (SaO408_1650) - 1782741..1783832 (-) 1092 WP_000066378.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  SaO408_RS08890 - 1784289..1784372 (-) 84 WP_031789490.1 hypothetical protein -
  SaO408_RS08895 (SaO408_1651) - 1784528..1786009 (-) 1482 WP_043039665.1 hypothetical protein -
  SaO408_RS08900 (SaO408_1652) - 1786083..1786574 (-) 492 WP_000383814.1 DUF948 domain-containing protein -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 36002.20 Da        Isoelectric Point: 5.7655

>NTDB_id=310808 SaO408_RS08875 WP_000219064.1 1781212..1782201(-) (ccpA) [Staphylococcus aureus strain O408 isolate B115]
MTVTIYDVAREARVSMATVSRVVNGNQNVKAETKNKVNEVIKRLNYRPNAVARGLASKKTTTVGVIIPDISNIYYSQLAR
GLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGIIFLGGTITEEMKELINQSSVPVVVSGTNGKDAHIASVNID
FTEAAKEITGELIEKGAKSFALVGGEHSKKAQEDVLAGLTEVLNKNGLQLGDTLNCSGAESYKEGVKAFAKMKGNLPDAI
LCISDEEAIGIMHSAMDAGIKVPEELQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMRLLTKYMNDEKIEEPNVVLPH
RIEYRGTTK

Nucleotide


Download         Length: 990 bp        

>NTDB_id=310808 SaO408_RS08875 WP_000219064.1 1781212..1782201(-) (ccpA) [Staphylococcus aureus strain O408 isolate B115]
ATGACAGTTACTATATATGATGTAGCAAGAGAAGCGCGTGTCTCTATGGCCACAGTGTCGCGTGTTGTTAATGGGAACCA
AAATGTTAAAGCAGAAACTAAAAATAAAGTTAACGAAGTCATTAAGCGTTTGAATTATCGTCCAAATGCTGTTGCTAGAG
GTTTAGCTAGTAAAAAGACAACAACAGTAGGTGTGATCATTCCAGATATATCTAATATCTATTATTCACAACTTGCTCGT
GGACTTGAAGATATTGCAACAATGTATAAATATCACTCAATTATTTCAAATTCAGATAACGATCCTGAAAAGGAAAAAGA
AATTTTTAATAACTTATTAAGTAAACAAGTTGATGGTATTATTTTCCTTGGTGGTACAATTACTGAAGAAATGAAAGAAT
TGATAAATCAATCATCTGTACCTGTAGTAGTATCAGGAACAAATGGCAAGGATGCACATATAGCATCTGTTAATATTGAT
TTTACTGAAGCTGCGAAAGAAATTACGGGAGAATTAATTGAAAAAGGCGCTAAATCATTTGCTTTAGTAGGTGGAGAACA
TTCTAAAAAAGCTCAAGAAGATGTTTTAGCAGGTTTAACTGAAGTGTTAAATAAAAATGGCCTTCAATTAGGTGATACAT
TGAATTGTTCTGGTGCTGAAAGTTATAAAGAAGGCGTAAAAGCTTTTGCTAAAATGAAAGGTAATCTTCCAGATGCTATA
TTATGTATCAGTGACGAAGAAGCTATTGGTATCATGCATAGTGCAATGGATGCTGGTATTAAAGTTCCAGAGGAATTACA
AATTATTAGTTTCAATAATACACGCTTAGTTGAGATGGTTAGACCACAACTTTCTAGTGTTATTCAACCATTATATGATA
TCGGTGCAGTAGGGATGCGCTTATTAACAAAATATATGAACGATGAAAAGATAGAAGAACCAAATGTAGTTTTACCACAC
AGAATTGAATACCGAGGAACTACAAAATAA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(171-328)

Bacterial regulatory proteins, lacI family (LacI)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

47.879

100

0.48
  ccpA Streptococcus gordonii str. Challis substr. CH1

47.112

100

0.471
  ccpA Streptococcus pneumoniae D39

46.201

100

0.462