Detailed information NTG0310800

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: D0C16_RS19145
• Genome accession: NZ_CP031728
• Coordinates: 4543188..4544594 (-)
• Length: 468 a.a.
• NCBI ID: WP_151033838.1
• Uniprot ID: A0A5J6PBP0
• Organism: Cellvibrio sp. KY-GH-1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 4538188..4549594

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0C16_RS19135 (D0C16_19425)	-	4541114..4541527 (+)	414	WP_151033837.1	type IV pilin protein	-
D0C16_RS19140 (D0C16_19430)	-	4541641..4543118 (+)	1478	WP_225319057.1	IS1182 family transposase	-
D0C16_RS19145 (D0C16_19435)	pilR	4543188..4544594 (-)	1407	WP_151033838.1	sigma-54 dependent transcriptional regulator	Regulator
D0C16_RS19150 (D0C16_19440)	-	4544609..4546258 (-)	1650	WP_151033839.1	PAS domain-containing sensor histidine kinase	-
D0C16_RS19155 (D0C16_19445)	-	4546433..4548061 (+)	1629	WP_151033840.1	NAD+ synthase	-
D0C16_RS19160 (D0C16_19450)	-	4548132..4549034 (-)	903	WP_151033841.1	outer membrane protein assembly factor BamD	-

Sequence

Protein

• Length: 468 a.a.
• Molecular weight: 52065.41 Da
• Isoelectric Point: 5.5199

>NTDB_id=310800 D0C16_RS19145 WP_151033838.1 4543188..4544594(-) (pilR) [Cellvibrio sp. KY-GH-1]
MSAKRALIIDDEPDIRELLEITLGRMQIDTQSAAGIQHAKQLLSENTYDLCLTDMRLPDGNGLEIVEYIQQRQPQLPVAV
ITAHGSIDTAIESMKAGAFDFISKPVDLATLRKLVNTAIESSQLTPQPVPKLTPIIGESKAIQELIRSIEKLARSQAPVY
ISGESGSGKELVAHSIHDLGPRANKPFIAVNCGAIPRELMESEFFGHKKGSFTGAHQDKVGLFQAAEGGTLFFDEVADLP
LDMQVKLLRAIQEKSVRPIGAAEEVATDVRILCATHKHLETEVKEGRFRQDLFYRLNVIQLAVAPLRERREDITLLTQHL
LNKLATEIGLPAPKLSPRAQQSLASYHFPGNVRELENILERAFTLCEANVIDADDLQLRDTPAPESYEKTYVSTSNKANV
RSNNSIVDYPARCAEYPSLDDYLQDVEKEILCNALEQARWNKTLAAKHLGISFRSLRYRLQKLGLDDE

Nucleotide

• Length: 1407 bp

>NTDB_id=310800 D0C16_RS19145 WP_151033838.1 4543188..4544594(-) (pilR) [Cellvibrio sp. KY-GH-1]
ATGAGTGCAAAACGCGCGCTGATTATCGATGACGAACCAGACATTCGTGAACTCTTGGAAATTACCTTGGGGCGAATGCA
AATCGATACCCAAAGTGCTGCAGGAATCCAGCACGCAAAACAACTACTATCCGAAAATACTTATGACTTATGTCTGACTG
ACATGCGGCTGCCCGATGGCAATGGACTGGAAATCGTCGAATATATCCAACAACGGCAACCGCAACTTCCCGTTGCGGTA
ATCACTGCCCATGGAAGTATCGACACAGCGATCGAATCGATGAAAGCAGGAGCATTTGACTTTATCTCCAAACCGGTAGA
TTTGGCCACATTGCGCAAACTAGTGAACACCGCCATAGAGTCAAGTCAATTAACACCGCAACCCGTTCCCAAACTAACGC
CGATTATTGGCGAATCAAAGGCCATTCAAGAGTTAATCCGAAGTATTGAAAAATTGGCGCGTTCACAAGCCCCGGTTTAT
ATCAGCGGAGAATCAGGGTCGGGCAAGGAACTTGTCGCCCATTCCATTCACGACCTGGGGCCGCGCGCAAACAAACCTTT
TATTGCCGTTAACTGTGGAGCAATTCCACGTGAGCTGATGGAAAGCGAATTTTTTGGCCATAAGAAAGGGAGCTTTACCG
GTGCCCATCAGGACAAAGTGGGACTATTTCAAGCTGCTGAGGGCGGCACTTTGTTTTTTGATGAAGTCGCAGATTTACCG
CTCGATATGCAAGTTAAATTATTGCGCGCAATTCAGGAAAAATCAGTTCGCCCGATTGGCGCAGCCGAAGAAGTTGCCAC
TGATGTGCGGATTTTATGTGCAACTCACAAACATTTGGAAACTGAAGTAAAAGAAGGGCGCTTCCGGCAAGATCTTTTTT
ATCGTTTAAATGTAATTCAACTAGCTGTTGCCCCATTACGAGAACGCCGGGAAGATATTACTCTATTAACTCAGCATTTG
TTAAATAAGCTCGCCACGGAAATTGGTTTACCCGCACCAAAACTATCACCACGAGCGCAACAATCATTGGCGAGCTATCA
TTTTCCTGGCAATGTACGCGAATTGGAAAATATTCTTGAGCGCGCCTTCACACTCTGTGAAGCCAACGTAATTGATGCAG
ACGATTTGCAGCTGCGCGACACGCCGGCTCCAGAATCCTATGAAAAAACCTATGTCAGCACCAGTAATAAAGCAAATGTT
CGCAGCAATAACAGTATCGTCGATTATCCCGCCCGCTGTGCGGAGTACCCTTCTCTCGACGATTACCTGCAAGATGTAGA
AAAAGAAATTTTATGCAACGCGCTCGAACAAGCCAGATGGAATAAAACATTGGCAGCAAAACACTTGGGGATTAGCTTTA
GATCTTTAAGATACAGGCTGCAAAAACTTGGACTTGATGATGAATAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (423-463)

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

• Response regulator receiver domain (Response_reg) (7-115)

3D structure

• AlphaFold DB: A0A5J6PBP0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.373	99.573	0.611
pilR	Acinetobacter baumannii strain A118	49.893	99.786	0.498