Detailed information NTG0310754

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: D0B88_RS01170
• Genome accession: NZ_CP031727
• Coordinates: 253027..254442 (+)
• Length: 471 a.a.
• NCBI ID: WP_151054408.1
• Uniprot ID: -
• Organism: Cellvibrio sp. KY-YJ-3
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 248027..259442

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0B88_RS01155 (D0B88_01160)	-	248452..249357 (+)	906	WP_151054402.1	outer membrane protein assembly factor BamD	-
D0B88_RS01160 (D0B88_01165)	-	249442..251070 (-)	1629	WP_151054404.1	NAD+ synthase	-
D0B88_RS01165 (D0B88_01170)	-	251328..252983 (+)	1656	WP_151054406.1	PAS domain-containing sensor histidine kinase	-
D0B88_RS01170 (D0B88_01175)	pilR	253027..254442 (+)	1416	WP_151054408.1	sigma-54 dependent transcriptional regulator	Regulator
D0B88_RS01175 (D0B88_01180)	-	254484..254927 (-)	444	WP_151054409.1	type IV pilin protein	-
D0B88_RS01180 (D0B88_01185)	-	254948..259414 (-)	4467	WP_191966483.1	pilus assembly protein	-

Sequence

Protein

• Length: 471 a.a.
• Molecular weight: 52373.70 Da
• Isoelectric Point: 5.5198

>NTDB_id=310754 D0B88_RS01170 WP_151054408.1 253027..254442(+) (pilR) [Cellvibrio sp. KY-YJ-3]
MTEKRALIIDDEPDIRELLEITLGRMQICTDTADSVANAKQMLANHSYDLCLTDMRLPDGKGLEIVELIQQRYPQLPVAV
ITAHGSVDAAIESMKAGAFDFISKPVNLATLRKLVNTAIEASQLAPQPVPKLTPIIGDSKAIQDLIRSIEKLARSQAPVY
ISGESGSGKELVAHSIHDLGPRANNPFIAVNCGAIPRELMESEFFGHKKGSFTGAHQDKIGLFQAAEGGTLFFDEVADLP
LDMQVKLLRAIQEKSVRPVGAAEEINTDVRILCATHKNLEEEVKEGRFRQDLFYRLNVIQLAVAPLRERREDIPLLTQHL
LRKLATEINLPSPSISPAAQNALNNYHFPGNVRELENILERAFTLCESNRIDADDLQLRSTAQGLSFAAEKSFSSNFNGN
KTNQQERIGVDYPARCAEYSSLDEYLQDVEKEILCHALEQAKWNKTLAAKHLGISFRSLRYRLQKLGLDDE

Nucleotide

• Length: 1416 bp

>NTDB_id=310754 D0B88_RS01170 WP_151054408.1 253027..254442(+) (pilR) [Cellvibrio sp. KY-YJ-3]
ATGACAGAAAAACGCGCTCTAATTATCGATGACGAACCGGACATCCGTGAACTGTTGGAAATTACGCTCGGTCGCATGCA
AATTTGCACCGACACCGCAGACTCAGTTGCCAACGCCAAACAAATGTTGGCCAACCACAGCTATGACTTGTGCCTGACCG
ATATGCGCCTGCCCGACGGCAAAGGCTTGGAGATTGTTGAGTTAATCCAACAGCGTTACCCACAGCTCCCTGTAGCGGTG
ATTACTGCTCACGGCAGTGTCGATGCCGCGATAGAATCAATGAAGGCAGGGGCGTTTGATTTCATTTCCAAACCAGTGAA
TCTCGCCACCTTGCGCAAACTGGTGAATACGGCAATTGAAGCCAGCCAGTTAGCACCACAACCAGTCCCCAAACTCACAC
CAATTATTGGTGACTCAAAAGCAATTCAGGATTTAATCCGCAGTATTGAAAAATTAGCCCGCTCGCAAGCGCCGGTTTAT
ATCAGCGGTGAATCAGGCTCGGGAAAGGAATTAGTCGCCCACTCTATTCACGACCTGGGGCCGCGCGCAAACAATCCGTT
TATCGCCGTCAACTGCGGCGCGATACCGCGCGAATTGATGGAGAGTGAATTTTTTGGTCACAAAAAAGGCAGCTTTACCG
GCGCGCATCAAGACAAAATTGGTTTATTCCAAGCAGCCGAGGGCGGCACCCTATTTTTCGATGAAGTCGCCGATTTACCG
CTGGATATGCAAGTCAAACTTCTGCGCGCCATTCAGGAGAAATCGGTTCGCCCCGTGGGCGCGGCAGAAGAAATTAATAC
CGATGTTCGTATTTTATGTGCGACTCATAAAAATCTTGAAGAGGAGGTCAAAGAAGGGCGTTTTCGTCAGGACTTATTTT
ACCGCCTGAATGTAATTCAACTAGCTGTCGCCCCGCTGCGCGAGCGACGGGAAGACATTCCCCTGCTCACCCAACACTTG
CTGCGAAAACTCGCCACCGAAATCAATTTGCCCAGCCCCAGCATTTCACCGGCAGCACAAAACGCACTAAACAATTACCA
CTTCCCCGGCAATGTGCGTGAGCTGGAAAATATTCTTGAGCGCGCATTTACACTGTGTGAAAGCAATCGGATTGATGCAG
ATGATTTGCAACTGCGCAGTACAGCGCAAGGCTTATCCTTTGCGGCTGAAAAATCATTTAGCAGCAACTTTAACGGCAAC
AAAACCAATCAGCAGGAACGCATAGGCGTTGACTATCCAGCTCGCTGCGCAGAGTACTCATCGCTGGATGAATATCTGCA
AGATGTTGAAAAAGAAATTCTCTGTCACGCCCTGGAACAAGCCAAGTGGAACAAAACACTCGCGGCAAAACATTTGGGAA
TTAGCTTTCGCTCGCTGAGGTACCGGTTGCAAAAGCTGGGGTTGGATGATGAGTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (135-301)

• Bacterial regulatory protein, Fis family (HTH_8) (426-466)

• Response regulator receiver domain (Response_reg) (7-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.062	99.575	0.588
pilR	Acinetobacter baumannii strain A118	48.941	100	0.49