Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   BEN71_RS11525 Genome accession   NZ_CP031716
Coordinates   2250648..2251259 (-) Length   203 a.a.
NCBI ID   WP_068973187.1    Uniprot ID   -
Organism   Acinetobacter wuhouensis strain WCHA60     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2245648..2256259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN71_RS11495 (BEN71_11495) - 2245825..2246256 (-) 432 WP_068973181.1 SRPBCC family protein -
  BEN71_RS11500 (BEN71_11500) tadA 2246364..2246906 (-) 543 WP_068973182.1 tRNA adenosine(34) deaminase TadA -
  BEN71_RS11505 (BEN71_11505) - 2246912..2248033 (-) 1122 WP_068973183.1 enoyl-CoA hydratase/isomerase family protein -
  BEN71_RS11510 (BEN71_11510) ung 2248030..2248743 (-) 714 WP_068973184.1 uracil-DNA glycosylase -
  BEN71_RS11515 (BEN71_11515) - 2248816..2249412 (-) 597 WP_068973185.1 6-carboxytetrahydropterin synthase -
  BEN71_RS11520 (BEN71_11520) gspK 2249636..2250598 (-) 963 WP_068973186.1 type II secretion system minor pseudopilin GspK -
  BEN71_RS11525 (BEN71_11525) xcpW 2250648..2251259 (-) 612 WP_068973187.1 type II secretion system minor pseudopilin GspJ Machinery gene
  BEN71_RS11530 (BEN71_11530) xcpV 2251307..2251687 (-) 381 WP_068973188.1 type II secretion system minor pseudopilin GspI Machinery gene
  BEN71_RS11535 (BEN71_11535) - 2251674..2252240 (-) 567 WP_068973189.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BEN71_RS11540 (BEN71_11540) - 2252246..2252860 (-) 615 WP_068973190.1 TetR/AcrR family transcriptional regulator -
  BEN71_RS11545 (BEN71_11545) - 2252933..2253706 (-) 774 WP_068973191.1 TatD family hydrolase -
  BEN71_RS11550 (BEN71_11550) - 2253741..2254082 (-) 342 WP_068973192.1 PilZ domain-containing protein -
  BEN71_RS11555 (BEN71_11555) - 2254120..2255100 (-) 981 WP_068973193.1 DNA polymerase III subunit delta' -
  BEN71_RS11560 (BEN71_11560) kdsB 2255177..2255938 (-) 762 WP_068973194.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23460.74 Da        Isoelectric Point: 5.4041

>NTDB_id=310684 BEN71_RS11525 WP_068973187.1 2250648..2251259(-) (xcpW) [Acinetobacter wuhouensis strain WCHA60]
MQKKSGFTLVELLVAIAIFAVLSALGWKVFDYLIKVKDRNAMHEENLGQLQGAYQQIQRDTLQIVPVSARNGDEIEPALR
LDNQKLAFSKSGVSDPLKQGLSPYERVEYVYNGQDKKIYRLKYSNLNRIRSDQPLSSVLLSDVDQYQIQILNPNETDRWP
DADIKDERQLPRGILMKVTIRDVEYEWVLSLLNTDYLQDKKDN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=310684 BEN71_RS11525 WP_068973187.1 2250648..2251259(-) (xcpW) [Acinetobacter wuhouensis strain WCHA60]
ATGCAAAAAAAATCAGGTTTTACACTGGTTGAACTATTGGTTGCGATCGCTATTTTCGCTGTACTTTCTGCACTCGGTTG
GAAAGTGTTTGATTATCTGATTAAAGTCAAAGATCGTAATGCAATGCATGAAGAAAATCTTGGGCAACTACAGGGCGCAT
ATCAACAAATACAACGTGATACATTGCAAATTGTGCCTGTTTCTGCACGAAATGGTGATGAAATTGAACCTGCATTGCGT
TTAGATAACCAAAAGTTAGCTTTTAGTAAATCAGGTGTTTCAGATCCATTGAAGCAAGGTTTATCGCCTTATGAGCGTGT
GGAATATGTCTATAATGGACAGGATAAAAAAATATATCGCTTAAAATATTCAAATTTAAATCGAATCCGTTCAGATCAGC
CTTTGTCGAGTGTTTTACTTTCCGATGTGGATCAATATCAAATTCAAATTTTAAATCCCAATGAGACTGATCGCTGGCCT
GATGCGGATATAAAAGACGAGAGACAACTGCCACGCGGGATTTTGATGAAAGTCACAATTCGGGATGTTGAATATGAGTG
GGTATTGAGTTTGCTCAATACAGATTATTTGCAGGATAAAAAGGATAATTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(57-184)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

61.224

96.552

0.591

Multiple sequence alignment