Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D0Y49_RS06585 | Genome accession | NZ_CP031701 |
| Coordinates | 1316972..1317490 (-) | Length | 172 a.a. |
| NCBI ID | WP_004896330.1 | Uniprot ID | A0A1Y4ICE7 |
| Organism | Lactobacillus johnsonii strain IDCC9203 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1311972..1322490
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0Y49_RS06565 (D0Y49_06565) | rplI | 1313107..1313562 (-) | 456 | WP_003651632.1 | 50S ribosomal protein L9 | - |
| D0Y49_RS06570 (D0Y49_06570) | - | 1313574..1315592 (-) | 2019 | WP_004896328.1 | DHH family phosphoesterase | - |
| D0Y49_RS06575 (D0Y49_06575) | - | 1315700..1316617 (-) | 918 | WP_004896329.1 | magnesium transporter CorA family protein | - |
| D0Y49_RS06580 (D0Y49_06580) | rpsR | 1316711..1316947 (-) | 237 | WP_003649728.1 | 30S ribosomal protein S18 | - |
| D0Y49_RS06585 (D0Y49_06585) | ssb | 1316972..1317490 (-) | 519 | WP_004896330.1 | single-stranded DNA-binding protein | Machinery gene |
| D0Y49_RS06590 (D0Y49_06590) | rpsF | 1317524..1317820 (-) | 297 | WP_004896331.1 | 30S ribosomal protein S6 | - |
| D0Y49_RS06595 (D0Y49_06595) | gyrA | 1318007..1320496 (-) | 2490 | WP_004896333.1 | DNA gyrase subunit A | - |
| D0Y49_RS06600 (D0Y49_06600) | gyrB | 1320507..1322474 (-) | 1968 | WP_004896334.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18600.32 Da Isoelectric Point: 4.7531
>NTDB_id=310577 D0Y49_RS06585 WP_004896330.1 1316972..1317490(-) (ssb) [Lactobacillus johnsonii strain IDCC9203]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFINCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDNFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSMNNAPASGESNKPQDPFADSG
STIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=310577 D0Y49_RS06585 WP_004896330.1 1316972..1317490(-) (ssb) [Lactobacillus johnsonii strain IDCC9203]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAAACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAACAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATATACCAATAGTCAAGGTGAACGTGGTGCTGATTTCATCAACTGTGTAATTT
GGCGTAAAGCAGCAGAAAATTTTGCTAACTTTACTTCAAAGGGTTCATTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTACGATGATAAAGACGGTAAGAGAGTATACGTGACTGAAGTCATTGTTGATAATTTCTCTTTACTAGAATCACGTCG
TGATCGTGAGAATCGTCAAACTAATGGTGGCAATTTTGCTCCCCAAGGAGGAAATGCTCCAAGTACCAATAATTTTGGTG
GATCAAGTGCACCAAGCATGAACAATGCTCCTGCTAGTGGAGAAAGCAATAAACCGCAAGATCCATTTGCAGATTCCGGT
AGCACAATTGACATCTCAGATGATGATCTCCCATTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.069 |
100 |
0.628 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.568 |
100 |
0.517 |