Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SSUBM407_RS00355 Genome accession   NC_012926
Coordinates   64535..65125 (+) Length   196 a.a.
NCBI ID   WP_011921679.1    Uniprot ID   A0A0H3N1H3
Organism   Streptococcus suis BM407     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 59535..70125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUBM407_RS00345 (SSUBM407_0052) - 60918..62441 (+) 1524 WP_011921677.1 Heme/copper-type cytochrome/quinol oxidase subunit 1 -
  SSUBM407_RS00350 (SSUBM407_0053) hexB 62559..64496 (+) 1938 WP_012775469.1 DNA mismatch repair endonuclease MutL Machinery gene
  SSUBM407_RS00355 (SSUBM407_0054) ruvA 64535..65125 (+) 591 WP_011921679.1 Holliday junction branch migration protein RuvA Machinery gene
  SSUBM407_RS00360 (SSUBM407_0056) - 65850..66419 (+) 570 WP_012774893.1 DNA-3-methyladenine glycosylase I -
  SSUBM407_RS00365 (SSUBM407_0057) cinA 66456..67637 (+) 1182 WP_012774894.1 competence/damage-inducible protein A Machinery gene
  SSUBM407_RS00370 (SSUBM407_0058) recA 67689..68840 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  SSUBM407_RS00375 (SSUBM407_0059) spx 69076..69474 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  SSUBM407_RS00380 (SSUBM407_0060) - 69574..69840 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21739.10 Da        Isoelectric Point: 5.0800

>NTDB_id=31057 SSUBM407_RS00355 WP_011921679.1 64535..65125(+) (ruvA) [Streptococcus suis BM407]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALEEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=31057 SSUBM407_RS00355 WP_011921679.1 64535..65125(+) (ruvA) [Streptococcus suis BM407]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATACATTGTGGTAGAAACGCAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCCTATTCAGGACAAGTCCAGCAAGAAGTGACTGTCTATACTCATCAGGTGATTCGTG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACAGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATCGAGCAGAAAAACATTAC
CTACCTGACCAAATTTCCAAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACTTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCCCTTGAAGAAGCCATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAACGACACTGCAGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N1H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

76.142

100

0.765
  ruvA Streptococcus pneumoniae D39

76.142

100

0.765
  ruvA Streptococcus pneumoniae TIGR4

76.142

100

0.765
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408