Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   E4K02_RS12450 Genome accession   NZ_CP038258
Coordinates   2533781..2534521 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   V5V999
Organism   Acinetobacter baumannii strain 39741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2528781..2539521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K02_RS12425 (E4K02_12425) aroK 2529122..2529691 (-) 570 WP_000643712.1 shikimate kinase AroK -
  E4K02_RS12430 (E4K02_12430) - 2529703..2531571 (-) 1869 Protein_2409 type IV pilus secretin PilQ -
  E4K02_RS12440 (E4K02_12440) - 2532881..2533180 (-) 300 Protein_2411 AMIN domain-containing protein -
  E4K02_RS12445 (E4K02_12445) pilP 2533243..2533770 (-) 528 WP_004833663.1 pilus assembly protein PilP Machinery gene
  E4K02_RS12450 (E4K02_12450) pilO 2533781..2534521 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  E4K02_RS12455 (E4K02_12455) pilN 2534518..2535159 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  E4K02_RS12460 (E4K02_12460) pilM 2535159..2536217 (-) 1059 WP_166806843.1 pilus assembly protein PilM Machinery gene
  E4K02_RS12465 (E4K02_12465) ponA 2536379..2538934 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=310465 E4K02_RS12450 WP_000076101.1 2533781..2534521(-) (pilO) [Acinetobacter baumannii strain 39741]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=310465 E4K02_RS12450 WP_000076101.1 2533781..2534521(-) (pilO) [Acinetobacter baumannii strain 39741]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5V999

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO/pilO Acinetobacter baylyi ADP1

69.421

98.374

0.683