Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   DXY21_RS07435 Genome accession   NZ_CP031694
Coordinates   1459997..1460686 (+) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM101368     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1454997..1465686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS07410 (DXY21_01475) degS 1455281..1456444 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  DXY21_RS07415 (DXY21_01476) degU 1456521..1457210 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DXY21_RS07420 (DXY21_01477) - 1457308..1458156 (+) 849 WP_060387196.1 DegV family protein -
  DXY21_RS07425 (DXY21_01478) comFA 1458264..1459649 (+) 1386 WP_160249192.1 DEAD/DEAH box helicase Machinery gene
  DXY21_RS07430 (DXY21_01479) - 1459707..1459991 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  DXY21_RS07435 (DXY21_01480) comFC 1459997..1460686 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  DXY21_RS07440 (DXY21_01481) - 1460760..1461179 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  DXY21_RS07445 (DXY21_01482) flgM 1461249..1461515 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DXY21_RS07450 (DXY21_01483) - 1461530..1462012 (+) 483 WP_003151394.1 flagellar protein FlgN -
  DXY21_RS07455 (DXY21_01484) flgK 1462028..1463545 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  DXY21_RS07460 (DXY21_01485) flgL 1463557..1464474 (+) 918 WP_069013671.1 flagellar hook-associated protein FlgL -
  DXY21_RS07465 (DXY21_01486) - 1464565..1465134 (+) 570 WP_069013670.1 DUF6470 family protein -
  DXY21_RS07470 (DXY21_01487) fliW 1465164..1465595 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=310390 DXY21_RS07435 WP_196616643.1 1459997..1460686(+) (comFC) [Bacillus velezensis strain SRCM101368]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=310390 DXY21_RS07435 WP_196616643.1 1459997..1460686(+) (comFC) [Bacillus velezensis strain SRCM101368]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment