Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   DXY21_RS07425 Genome accession   NZ_CP031694
Coordinates   1458264..1459649 (+) Length   461 a.a.
NCBI ID   WP_160249192.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM101368     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1453264..1464649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS07405 (DXY21_01474) - 1454411..1455058 (-) 648 WP_160249191.1 YigZ family protein -
  DXY21_RS07410 (DXY21_01475) degS 1455281..1456444 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  DXY21_RS07415 (DXY21_01476) degU 1456521..1457210 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DXY21_RS07420 (DXY21_01477) - 1457308..1458156 (+) 849 WP_060387196.1 DegV family protein -
  DXY21_RS07425 (DXY21_01478) comFA 1458264..1459649 (+) 1386 WP_160249192.1 DEAD/DEAH box helicase Machinery gene
  DXY21_RS07430 (DXY21_01479) - 1459707..1459991 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  DXY21_RS07435 (DXY21_01480) comFC 1459997..1460686 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  DXY21_RS07440 (DXY21_01481) - 1460760..1461179 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  DXY21_RS07445 (DXY21_01482) flgM 1461249..1461515 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DXY21_RS07450 (DXY21_01483) - 1461530..1462012 (+) 483 WP_003151394.1 flagellar protein FlgN -
  DXY21_RS07455 (DXY21_01484) flgK 1462028..1463545 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  DXY21_RS07460 (DXY21_01485) flgL 1463557..1464474 (+) 918 WP_069013671.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52479.03 Da        Isoelectric Point: 10.3285

>NTDB_id=310389 DXY21_RS07425 WP_160249192.1 1458264..1459649(+) (comFA) [Bacillus velezensis strain SRCM101368]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKAYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKGRQELLVWAVCGSGKTEMLFPGIEY
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=310389 DXY21_RS07425 WP_160249192.1 1458264..1459649(+) (comFA) [Bacillus velezensis strain SRCM101368]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGCATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAGAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGGGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTAT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment