Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DXY21_RS07415 Genome accession   NZ_CP031694
Coordinates   1456521..1457210 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SRCM101368     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1451521..1462210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS07395 (DXY21_01472) - 1452026..1453102 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  DXY21_RS07400 (DXY21_01473) - 1453192..1454406 (-) 1215 WP_160249190.1 LCP family protein -
  DXY21_RS07405 (DXY21_01474) - 1454411..1455058 (-) 648 WP_160249191.1 YigZ family protein -
  DXY21_RS07410 (DXY21_01475) degS 1455281..1456444 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  DXY21_RS07415 (DXY21_01476) degU 1456521..1457210 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DXY21_RS07420 (DXY21_01477) - 1457308..1458156 (+) 849 WP_060387196.1 DegV family protein -
  DXY21_RS07425 (DXY21_01478) comFA 1458264..1459649 (+) 1386 WP_160249192.1 DEAD/DEAH box helicase Machinery gene
  DXY21_RS07430 (DXY21_01479) - 1459707..1459991 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  DXY21_RS07435 (DXY21_01480) comFC 1459997..1460686 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  DXY21_RS07440 (DXY21_01481) - 1460760..1461179 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  DXY21_RS07445 (DXY21_01482) flgM 1461249..1461515 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  DXY21_RS07450 (DXY21_01483) - 1461530..1462012 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=310388 DXY21_RS07415 WP_003219701.1 1456521..1457210(+) (degU) [Bacillus velezensis strain SRCM101368]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=310388 DXY21_RS07415 WP_003219701.1 1456521..1457210(+) (degU) [Bacillus velezensis strain SRCM101368]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment