Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DXY21_RS02860 Genome accession   NZ_CP031694
Coordinates   556180..557133 (-) Length   317 a.a.
NCBI ID   WP_046559346.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM101368     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 551180..562133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXY21_RS02840 (DXY21_00565) - 552062..553483 (+) 1422 WP_014304342.1 MDR family MFS transporter -
  DXY21_RS02845 (DXY21_00566) - 553525..554469 (-) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  DXY21_RS02850 (DXY21_00567) - 554491..555249 (-) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  DXY21_RS02855 (DXY21_00568) - 555243..556190 (-) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  DXY21_RS02860 (DXY21_00569) ceuB 556180..557133 (-) 954 WP_046559346.1 ABC transporter permease Machinery gene
  DXY21_RS02865 (DXY21_00570) - 557548..558912 (+) 1365 WP_014304341.1 aspartate kinase -
  DXY21_RS02870 - 558992..559102 (+) 111 WP_369719092.1 YjcZ family sporulation protein -
  DXY21_RS02875 (DXY21_00571) phrC 559252..559371 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  DXY21_RS02880 (DXY21_00572) rapC 559355..560503 (-) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  DXY21_RS02885 (DXY21_00573) - 560656..562089 (-) 1434 WP_162130794.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=310369 DXY21_RS02860 WP_046559346.1 556180..557133(-) (ceuB) [Bacillus velezensis strain SRCM101368]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMIFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=310369 DXY21_RS02860 WP_046559346.1 556180..557133(-) (ceuB) [Bacillus velezensis strain SRCM101368]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGATTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533

Multiple sequence alignment