Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | CH578_RS03925 | Genome accession | NZ_CP031690 |
| Coordinates | 755182..755631 (+) | Length | 149 a.a. |
| NCBI ID | WP_011271973.1 | Uniprot ID | Q4QNP4 |
| Organism | Haemophilus influenzae strain P617-9224 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 750182..760631
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH578_RS03905 (CH578_03905) | rsmE | 750647..751384 (-) | 738 | WP_011271976.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| CH578_RS03910 (CH578_03910) | lnt | 751434..752963 (-) | 1530 | WP_079989936.1 | apolipoprotein N-acyltransferase | - |
| CH578_RS03915 (CH578_03915) | corC | 752986..753885 (-) | 900 | WP_005656283.1 | CNNM family magnesium/cobalt transport protein CorC | - |
| CH578_RS03920 (CH578_03920) | ampD | 754507..755067 (-) | 561 | WP_070828280.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| CH578_RS03925 (CH578_03925) | pilA | 755182..755631 (+) | 450 | WP_011271973.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CH578_RS03930 (CH578_03930) | pilB | 755628..757022 (+) | 1395 | WP_011271972.1 | GspE/PulE family protein | Machinery gene |
| CH578_RS03935 (CH578_03935) | pilC | 757019..758239 (+) | 1221 | WP_011271971.1 | type II secretion system F family protein | Machinery gene |
| CH578_RS03940 (CH578_03940) | pilD | 758236..758928 (+) | 693 | WP_038440789.1 | prepilin peptidase | Machinery gene |
| CH578_RS03945 (CH578_03945) | rho | 758982..760244 (-) | 1263 | WP_005629550.1 | transcription termination factor Rho | - |
Sequence
Protein
Download Length: 149 a.a. Molecular weight: 15572.89 Da Isoelectric Point: 8.0922
>NTDB_id=310202 CH578_RS03925 WP_011271973.1 755182..755631(+) (pilA) [Haemophilus influenzae strain P617-9224]
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTNCTGGKNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
MKLTTQQTLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTNETTNCTGGKNGIA
ADITTAKGYVKSVTTSNGAITVKGDGTLANMEYILQATGNAATGVTWTTTCKGTDASLFPANFCGSVTQ
Nucleotide
Download Length: 450 bp
>NTDB_id=310202 CH578_RS03925 WP_011271973.1 755182..755631(+) (pilA) [Haemophilus influenzae strain P617-9224]
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
ATGAAACTAACAACACAGCAAACCTTGAAAAAAGGGTTTACATTAATAGAGCTAATGATTGTGATTGCAATTATTGCTAT
TTTAGCCACTATCGCAATTCCCTCTTATCAAAATTATACTAAAAAAGCAGCGGTATCTGAATTACTGCAAGCGTCAGCGC
CTTATAAGGCTGATGTGGAATTATGTGTATATAGCACAAATGAAACAACAAACTGTACGGGTGGAAAAAATGGTATTGCA
GCAGATATAACCACAGCAAAAGGCTATGTAAAATCAGTGACAACAAGCAACGGTGCAATAACAGTAAAAGGGGATGGCAC
ATTGGCAAATATGGAATATATTTTGCAAGCTACAGGTAATGCTGCAACAGGTGTAACTTGGACAACAACTTGCAAAGGAA
CGGATGCCTCTTTATTTCCAGCAAATTTTTGCGGAAGTGTCACACAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| pilA | Haemophilus influenzae Rd KW20 |
91.946 |
100 |
0.919 |
| pilA | Glaesserella parasuis strain SC1401 |
54.362 |
100 |
0.544 |
| pilA2 | Legionella pneumophila str. Paris |
41.497 |
98.658 |
0.409 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.497 |
98.658 |
0.409 |
| pilA | Vibrio campbellii strain DS40M4 |
39.716 |
94.631 |
0.376 |