Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CH578_RS02930 | Genome accession | NZ_CP031690 |
| Coordinates | 583262..583675 (+) | Length | 137 a.a. |
| NCBI ID | WP_070828390.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P617-9224 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 578262..588675
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH578_RS02910 (CH578_02910) | - | 578750..581344 (-) | 2595 | WP_070828392.1 | penicillin-binding protein 1A | - |
| CH578_RS02915 (CH578_02915) | comA | 581443..582240 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| CH578_RS02920 (CH578_02920) | comB | 582241..582747 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| CH578_RS02925 (CH578_02925) | comC | 582744..583265 (+) | 522 | WP_070828391.1 | competence protein ComC | Machinery gene |
| CH578_RS02930 (CH578_02930) | comD | 583262..583675 (+) | 414 | WP_070828390.1 | pilus assembly protein PilP | Machinery gene |
| CH578_RS02935 (CH578_02935) | comE | 583685..585022 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| CH578_RS02940 (CH578_02940) | - | 585035..585721 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| CH578_RS02945 (CH578_02945) | nfuA | 585797..586393 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH578_RS02950 (CH578_02950) | nudC | 586460..587254 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| CH578_RS02955 (CH578_02955) | - | 587290..587880 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| CH578_RS02960 (CH578_02960) | - | 588020..588292 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15629.73 Da Isoelectric Point: 4.4355
>NTDB_id=310196 CH578_RS02930 WP_070828390.1 583262..583675(+) (comD) [Haemophilus influenzae strain P617-9224]
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=310196 CH578_RS02930 WP_070828390.1 583262..583675(+) (comD) [Haemophilus influenzae strain P617-9224]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
95.62 |
100 |
0.956 |
| comD | Haemophilus influenzae Rd KW20 |
94.891 |
100 |
0.949 |